Variant report

Variant	rs7818310
Chromosome Location	chr8:107234155-107234156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10091520	0.96[EUR][1000 genomes]
rs10107881	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10283310	1.00[ASN][1000 genomes]
rs11994723	1.00[ASN][1000 genomes]
rs12334729	0.95[EUR][1000 genomes]
rs16874237	1.00[ASN][1000 genomes]
rs16874253	0.95[EUR][1000 genomes]
rs17249522	0.89[EUR][1000 genomes]
rs17327366	0.91[EUR][1000 genomes]
rs28409835	0.96[EUR][1000 genomes]
rs28551770	0.96[EUR][1000 genomes]
rs28699587	1.00[ASN][1000 genomes]
rs41386646	0.84[EUR][1000 genomes]
rs55946450	1.00[ASN][1000 genomes]
rs57194187	1.00[ASN][1000 genomes]
rs59536759	1.00[ASN][1000 genomes]
rs59854028	1.00[ASN][1000 genomes]
rs61105228	1.00[ASN][1000 genomes]
rs61553007	1.00[ASN][1000 genomes]
rs62526092	0.84[EUR][1000 genomes]
rs62526093	0.84[EUR][1000 genomes]
rs62526094	0.91[EUR][1000 genomes]
rs62526095	0.91[EUR][1000 genomes]
rs62526099	0.91[EUR][1000 genomes]
rs62526100	0.93[EUR][1000 genomes]
rs62526102	0.91[EUR][1000 genomes]
rs6469050	0.93[EUR][1000 genomes]
rs6986205	1.00[ASN][1000 genomes]
rs7010241	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73301406	1.00[ASN][1000 genomes]
rs73698647	1.00[ASN][1000 genomes]
rs7824769	1.00[ASN][1000 genomes]
rs7825348	1.00[ASN][1000 genomes]
rs7825353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2533164	chr8:107233777-107236814	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1956904	chr8:107234060-107236147	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv19179	chr8:107234068-107235610	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3479750	chr8:107234098-107236084	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3479751	chr8:107234132-107236053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107233600-107234200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr8:107233600-107234200	Enhancers	NHLF	lung
3	chr8:107233600-107234400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107233600-107234400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:107233600-107234400	Enhancers	NH-A	brain
6	chr8:107233800-107234400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:107234000-107234200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:107234000-107234200	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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