Variant report

Variant	rs62526100
Chromosome Location	chr8:107221527-107221528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10091520	0.89[EUR][1000 genomes]
rs12334729	0.87[EUR][1000 genomes]
rs16874253	0.87[EUR][1000 genomes]
rs17249522	0.89[EUR][1000 genomes]
rs17327366	0.94[EUR][1000 genomes]
rs28409835	0.89[EUR][1000 genomes]
rs28551770	0.89[EUR][1000 genomes]
rs41386646	0.87[EUR][1000 genomes]
rs62526092	0.87[EUR][1000 genomes]
rs62526093	0.87[EUR][1000 genomes]
rs62526094	0.94[EUR][1000 genomes]
rs62526095	0.94[EUR][1000 genomes]
rs62526099	0.94[EUR][1000 genomes]
rs62526102	0.94[EUR][1000 genomes]
rs6469049	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6469050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818310	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
2	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107218000-107221600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:107218000-107221600	Enhancers	Osteobl	bone
5	chr8:107218200-107221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:107218600-107221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:107218600-107222000	Enhancers	HUVEC	blood vessel
8	chr8:107220200-107221600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:107220400-107222200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:107220600-107229200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:107221000-107221600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107221200-107222000	Enhancers	Aorta	Aorta
13	chr8:107221400-107222000	Weak transcription	Fetal Lung	lung
14	chr8:107221400-107223200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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