Variant report

Variant	rs6469050
Chromosome Location	chr8:107218882-107218883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10091520	0.89[EUR][1000 genomes]
rs12334729	0.87[EUR][1000 genomes]
rs16874253	0.87[EUR][1000 genomes]
rs17249522	0.89[EUR][1000 genomes]
rs17327366	0.94[EUR][1000 genomes]
rs28409835	0.89[EUR][1000 genomes]
rs28551770	0.89[EUR][1000 genomes]
rs41386646	0.87[EUR][1000 genomes]
rs62526092	0.87[EUR][1000 genomes]
rs62526093	0.87[EUR][1000 genomes]
rs62526094	0.94[EUR][1000 genomes]
rs62526095	0.94[EUR][1000 genomes]
rs62526099	0.94[EUR][1000 genomes]
rs62526100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526102	0.94[EUR][1000 genomes]
rs6469049	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7818310	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
3	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107216400-107219400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:107217800-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:107218000-107219200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:107218000-107219200	Enhancers	Placenta	Placenta
8	chr8:107218000-107221600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:107218000-107221600	Enhancers	Osteobl	bone
10	chr8:107218200-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:107218200-107220000	Enhancers	NHEK	skin
12	chr8:107218200-107221200	Enhancers	NHLF	lung
13	chr8:107218200-107221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:107218400-107219000	Enhancers	HSMM	muscle
15	chr8:107218400-107219200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:107218400-107221200	Enhancers	NH-A	brain
17	chr8:107218600-107219000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:107218600-107219000	Enhancers	Aorta	Aorta
19	chr8:107218600-107219000	Enhancers	Fetal Muscle Leg	muscle
20	chr8:107218600-107219200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:107218600-107219200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:107218600-107219200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:107218600-107219200	Flanking Active TSS	A549	lung
24	chr8:107218600-107221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:107218600-107222000	Enhancers	HUVEC	blood vessel
26	chr8:107218800-107219000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr8:107218800-107219200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:107218800-107219200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:107218800-107219200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:107218800-107219200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:107218800-107219600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:107218800-107220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:107218800-107221400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links