Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10091520	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12334729	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16874253	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17249522	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17327366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28409835	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28551770	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41386646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526087	0.83[AMR][1000 genomes]
rs62526089	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62526090	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62526091	0.82[EUR][1000 genomes]
rs62526092	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526093	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526094	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526100	0.94[EUR][1000 genomes]
rs62526102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527459	0.83[AMR][1000 genomes]
rs6469050	0.94[EUR][1000 genomes]
rs7818310	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107212600-107218000	Weak transcription	Osteobl	bone
3	chr8:107212600-107218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107213400-107218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:107215000-107217000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107215000-107218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
8	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107216000-107218000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:107216200-107218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:107216200-107218200	Weak transcription	A549	lung
12	chr8:107216400-107219400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr8:107216600-107218200	Weak transcription	NHLF	lung
14	chr8:107216600-107218600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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