Variant report

Variant	rs62526094
Chromosome Location	chr8:107210616-107210617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10091520	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12334729	0.92[EUR][1000 genomes]
rs16874253	0.92[EUR][1000 genomes]
rs17249522	0.94[EUR][1000 genomes]
rs17327366	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28409835	0.94[EUR][1000 genomes]
rs28551770	0.94[EUR][1000 genomes]
rs41386646	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526089	0.82[EUR][1000 genomes]
rs62526090	0.82[EUR][1000 genomes]
rs62526091	0.82[EUR][1000 genomes]
rs62526092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526095	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526099	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526100	0.94[EUR][1000 genomes]
rs62526102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469050	0.94[EUR][1000 genomes]
rs7818310	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107204200-107214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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