Variant report

Variant	rs62526089
Chromosome Location	chr8:107199782-107199783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10092735	0.82[EUR][1000 genomes]
rs17327366	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41386646	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62526087	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62526088	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62526090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62526092	0.90[EUR][1000 genomes]
rs62526093	0.90[EUR][1000 genomes]
rs62526094	0.82[EUR][1000 genomes]
rs62526095	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62526099	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62526102	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62527459	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469049	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107199000-107199800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:107199000-107199800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:107199000-107199800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:107199400-107203800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:107199600-107204800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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