Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10091520	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16874253	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17249522	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17249646	0.80[EUR][1000 genomes]
rs17327366	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28409835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28446593	0.80[EUR][1000 genomes]
rs41386646	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60953670	0.80[EUR][1000 genomes]
rs62526092	0.87[EUR][1000 genomes]
rs62526093	0.87[EUR][1000 genomes]
rs62526094	0.94[EUR][1000 genomes]
rs62526095	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62526099	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62526100	0.89[EUR][1000 genomes]
rs62526102	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62526130	0.80[EUR][1000 genomes]
rs62526132	0.80[EUR][1000 genomes]
rs6469050	0.89[EUR][1000 genomes]
rs7818310	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2533164	chr8:107233777-107236814	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1956904	chr8:107234060-107236147	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv19179	chr8:107234068-107235610	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3479750	chr8:107234098-107236084	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3479751	chr8:107234132-107236053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3479753	chr8:107234216-107235975	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv1804055	chr8:107234375-107240209	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107234200-107236600	Weak transcription	NHLF	lung

Quick Search: