Variant report
| Variant | rs10091520 |
|---|---|
| Chromosome Location | chr8:107226287-107226288 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12334729 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16874253 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17249522 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17249646 | 0.80[EUR][1000 genomes] |
| rs17327366 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28409835 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28446593 | 0.80[EUR][1000 genomes] |
| rs28551770 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41386646 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs60953670 | 0.80[EUR][1000 genomes] |
| rs62526092 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62526093 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62526094 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62526095 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62526099 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62526100 | 0.89[EUR][1000 genomes] |
| rs62526102 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62526130 | 0.80[EUR][1000 genomes] |
| rs62526132 | 0.80[EUR][1000 genomes] |
| rs6469050 | 0.89[EUR][1000 genomes] |
| rs7818310 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv891263 | chr8:107210629-107239780 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv397163 | chr8:107221704-107230062 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107220600-107229200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr8:107225400-107231000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
