Variant report

Variant	rs59536759
Chromosome Location	chr8:107232327-107232328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10107881	1.00[ASN][1000 genomes]
rs10283310	1.00[ASN][1000 genomes]
rs11994723	1.00[ASN][1000 genomes]
rs16874237	1.00[ASN][1000 genomes]
rs28699587	1.00[ASN][1000 genomes]
rs55946450	1.00[ASN][1000 genomes]
rs57194187	1.00[ASN][1000 genomes]
rs59854028	1.00[ASN][1000 genomes]
rs61105228	1.00[ASN][1000 genomes]
rs61553007	1.00[ASN][1000 genomes]
rs6986205	1.00[ASN][1000 genomes]
rs7010241	1.00[ASN][1000 genomes]
rs73301406	1.00[ASN][1000 genomes]
rs73698647	1.00[ASN][1000 genomes]
rs7818310	1.00[ASN][1000 genomes]
rs7824769	1.00[ASN][1000 genomes]
rs7825348	1.00[ASN][1000 genomes]
rs7825353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107230000-107232400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:107230000-107232600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:107230200-107232400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107230400-107232400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:107230400-107232600	Enhancers	Fetal Heart	heart
6	chr8:107230600-107232400	Enhancers	Fetal Stomach	stomach
7	chr8:107230800-107232400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:107231000-107232600	Enhancers	HMEC	breast
9	chr8:107231000-107233800	Weak transcription	Aorta	Aorta
10	chr8:107231400-107232600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:107231800-107232400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:107231800-107232600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:107231800-107233600	Weak transcription	NH-A	brain
14	chr8:107232000-107232400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:107232000-107233600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:107232000-107233600	Weak transcription	NHLF	lung
17	chr8:107232000-107233800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:107232000-107234000	Weak transcription	HSMMtube	muscle
19	chr8:107232200-107232600	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:107232200-107232600	Enhancers	NHEK	skin
21	chr8:107232200-107233600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:107232200-107233600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:107232200-107233600	Weak transcription	NHDF-Ad	bronchial
24	chr8:107232200-107233600	Weak transcription	Osteobl	bone

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