Variant report

Variant	rs10283310
Chromosome Location	chr8:107218721-107218722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10107881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993757	1.00[EUR][1000 genomes]
rs11994723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996800	1.00[EUR][1000 genomes]
rs16874228	1.00[CHD][hapmap]
rs16874237	1.00[ASN][1000 genomes]
rs2345576	1.00[EUR][1000 genomes]
rs28699587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28765202	1.00[EUR][1000 genomes]
rs35718371	1.00[EUR][1000 genomes]
rs55946450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191845	1.00[EUR][1000 genomes]
rs57194187	1.00[ASN][1000 genomes]
rs58312910	1.00[EUR][1000 genomes]
rs59229125	1.00[EUR][1000 genomes]
rs59536759	1.00[ASN][1000 genomes]
rs59854028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61105228	1.00[ASN][1000 genomes]
rs61553007	1.00[ASN][1000 genomes]
rs6986205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010241	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73299543	1.00[EUR][1000 genomes]
rs73299560	1.00[EUR][1000 genomes]
rs73299569	1.00[EUR][1000 genomes]
rs73301406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698639	1.00[EUR][1000 genomes]
rs73698647	1.00[ASN][1000 genomes]
rs73698689	1.00[EUR][1000 genomes]
rs73698690	1.00[EUR][1000 genomes]
rs7818310	1.00[ASN][1000 genomes]
rs7824769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825348	1.00[ASN][1000 genomes]
rs7825353	1.00[ASN][1000 genomes]
rs7827776	1.00[EUR][1000 genomes]
rs7841705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107212600-107218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:107215000-107218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
5	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107216400-107219400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:107217800-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:107218000-107219200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:107218000-107219200	Enhancers	Placenta	Placenta
10	chr8:107218000-107221600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:107218000-107221600	Enhancers	Osteobl	bone
12	chr8:107218200-107218800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:107218200-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:107218200-107220000	Enhancers	NHEK	skin
15	chr8:107218200-107221200	Enhancers	NHLF	lung
16	chr8:107218200-107221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:107218400-107218800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr8:107218400-107219000	Enhancers	HSMM	muscle
19	chr8:107218400-107219200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:107218400-107221200	Enhancers	NH-A	brain
21	chr8:107218600-107218800	Enhancers	Fetal Lung	lung
22	chr8:107218600-107219000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:107218600-107219000	Enhancers	Aorta	Aorta
24	chr8:107218600-107219000	Enhancers	Fetal Muscle Leg	muscle
25	chr8:107218600-107219200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:107218600-107219200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:107218600-107219200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:107218600-107219200	Flanking Active TSS	A549	lung
29	chr8:107218600-107221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:107218600-107222000	Enhancers	HUVEC	blood vessel

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