Variant report
| Variant | rs11996800 |
|---|---|
| Chromosome Location | chr8:107205294-107205295 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:70000635..70001313-chr8:107205166..107205966,2 | MCF-7 | breast: | |
| 2 | chr8:107016556..107017185-chr8:107205109..107205836,2 | K562 | blood: | |
| 3 | chr8:107202671..107205667-chr8:107207577..107209109,2 | K562 | blood: | |
| 4 | chr8:106945168..106945969-chr8:107205051..107205557,2 | K562 | blood: | |
| 5 | chr8:107151407..107152661-chr8:107205138..107206005,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10107881 | 1.00[EUR][1000 genomes] |
| rs10283310 | 1.00[EUR][1000 genomes] |
| rs11993012 | 1.00[AMR][1000 genomes] |
| rs11993757 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11994723 | 1.00[EUR][1000 genomes] |
| rs11997484 | 1.00[AMR][1000 genomes] |
| rs2345576 | 1.00[EUR][1000 genomes] |
| rs28699587 | 1.00[EUR][1000 genomes] |
| rs28765202 | 1.00[EUR][1000 genomes] |
| rs35718371 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55946450 | 1.00[EUR][1000 genomes] |
| rs56191845 | 1.00[EUR][1000 genomes] |
| rs58312910 | 1.00[EUR][1000 genomes] |
| rs59229125 | 1.00[EUR][1000 genomes] |
| rs59854028 | 1.00[EUR][1000 genomes] |
| rs6469048 | 1.00[AMR][1000 genomes] |
| rs6986205 | 1.00[EUR][1000 genomes] |
| rs6994508 | 1.00[AMR][1000 genomes] |
| rs73299543 | 1.00[EUR][1000 genomes] |
| rs73299560 | 1.00[EUR][1000 genomes] |
| rs73299569 | 1.00[EUR][1000 genomes] |
| rs73301406 | 1.00[EUR][1000 genomes] |
| rs73698627 | 1.00[AMR][1000 genomes] |
| rs73698634 | 1.00[AMR][1000 genomes] |
| rs73698639 | 1.00[EUR][1000 genomes] |
| rs73698689 | 1.00[EUR][1000 genomes] |
| rs73698690 | 1.00[EUR][1000 genomes] |
| rs7824769 | 1.00[EUR][1000 genomes] |
| rs7827776 | 1.00[EUR][1000 genomes] |
| rs7830413 | 1.00[AMR][1000 genomes] |
| rs7841705 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv891262 | chr8:107076421-107209378 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107204200-107214400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr8:107204800-107205800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr8:107205000-107206000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
