Variant report

Variant	rs7830413
Chromosome Location	chr8:107160969-107160970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11993012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993757	1.00[AMR][1000 genomes]
rs11996800	1.00[AMR][1000 genomes]
rs11997484	1.00[AMR][1000 genomes]
rs35718371	1.00[AMR][1000 genomes]
rs6469048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6994508	1.00[AMR][1000 genomes]
rs73698627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107158800-107161200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107159200-107161200	Enhancers	Osteobl	bone
3	chr8:107159200-107162600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:107159400-107161000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107159400-107161800	Enhancers	NHDF-Ad	bronchial
6	chr8:107159400-107162600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:107159600-107161400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:107160400-107161000	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:107160400-107161000	Enhancers	NH-A	brain
10	chr8:107160600-107161000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:107160800-107161000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107160800-107161600	Weak transcription	Aorta	Aorta
13	chr8:107160800-107162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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