Variant report

Variant	rs11993012
Chromosome Location	chr8:107108207-107108208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11993757	1.00[AMR][1000 genomes]
rs11996800	1.00[AMR][1000 genomes]
rs11997484	1.00[AMR][1000 genomes]
rs35718371	1.00[AMR][1000 genomes]
rs6469048	1.00[AMR][1000 genomes]
rs6994508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698627	1.00[AMR][1000 genomes]
rs73698634	1.00[AMR][1000 genomes]
rs7830413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107105000-107108800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:107107200-107108800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:107107200-107108800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:107107200-107109000	Enhancers	Brain Anterior Caudate	brain
5	chr8:107107400-107108800	Weak transcription	Brain Angular Gyrus	brain
6	chr8:107107600-107108800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:107107800-107108800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:107107800-107109000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:107107800-107109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:107107800-107109600	Enhancers	Aorta	Aorta
11	chr8:107108000-107108600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:107108000-107108600	Weak transcription	Brain Substantia Nigra	brain
13	chr8:107108000-107108800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:107108000-107108800	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:107108200-107108600	Weak transcription	Right Atrium	heart
16	chr8:107108200-107109000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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