Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10107881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993757	1.00[EUR][1000 genomes]
rs11994723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996800	1.00[EUR][1000 genomes]
rs16874237	1.00[ASN][1000 genomes]
rs2345576	1.00[EUR][1000 genomes]
rs28765202	1.00[EUR][1000 genomes]
rs35718371	1.00[EUR][1000 genomes]
rs55946450	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191845	1.00[EUR][1000 genomes]
rs57194187	1.00[ASN][1000 genomes]
rs58312910	1.00[EUR][1000 genomes]
rs59229125	1.00[EUR][1000 genomes]
rs59536759	1.00[ASN][1000 genomes]
rs59854028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61105228	1.00[ASN][1000 genomes]
rs61553007	1.00[ASN][1000 genomes]
rs6986205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010241	1.00[ASN][1000 genomes]
rs73299543	1.00[EUR][1000 genomes]
rs73299560	1.00[EUR][1000 genomes]
rs73299569	1.00[EUR][1000 genomes]
rs73301406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698639	1.00[EUR][1000 genomes]
rs73698647	1.00[ASN][1000 genomes]
rs73698689	1.00[EUR][1000 genomes]
rs73698690	1.00[EUR][1000 genomes]
rs7818310	1.00[ASN][1000 genomes]
rs7824769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825348	1.00[ASN][1000 genomes]
rs7825353	1.00[ASN][1000 genomes]
rs7827776	1.00[EUR][1000 genomes]
rs7841705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107212600-107218000	Weak transcription	Osteobl	bone
3	chr8:107212600-107218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107213400-107218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:107215000-107217000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107215000-107218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
8	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107215600-107216600	Enhancers	NHLF	lung
10	chr8:107216000-107216400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:107216000-107216600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:107216000-107218000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:107216200-107218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:107216200-107218200	Weak transcription	A549	lung

Quick Search: