Variant report

Variant	rs7827776
Chromosome Location	chr8:107109057-107109058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10107881	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10283310	1.00[EUR][1000 genomes]
rs11993757	1.00[EUR][1000 genomes]
rs11994723	1.00[EUR][1000 genomes]
rs11996800	1.00[EUR][1000 genomes]
rs16874228	1.00[CHD][hapmap]
rs16874234	0.84[MKK][hapmap]
rs2345576	1.00[EUR][1000 genomes]
rs28699587	1.00[EUR][1000 genomes]
rs28765202	1.00[EUR][1000 genomes]
rs35718371	1.00[EUR][1000 genomes]
rs55946450	1.00[EUR][1000 genomes]
rs56191845	1.00[EUR][1000 genomes]
rs58312910	1.00[EUR][1000 genomes]
rs59229125	1.00[EUR][1000 genomes]
rs59854028	1.00[EUR][1000 genomes]
rs6986205	1.00[EUR][1000 genomes]
rs73299543	1.00[EUR][1000 genomes]
rs73299560	1.00[EUR][1000 genomes]
rs73299569	1.00[EUR][1000 genomes]
rs73301406	1.00[EUR][1000 genomes]
rs73698639	1.00[EUR][1000 genomes]
rs73698689	1.00[EUR][1000 genomes]
rs73698690	1.00[EUR][1000 genomes]
rs7824769	1.00[EUR][1000 genomes]
rs7841705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107107800-107109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107107800-107109600	Enhancers	Aorta	Aorta
3	chr8:107108400-107109200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:107108600-107109200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:107108600-107109200	Enhancers	Colon Smooth Muscle	Colon
6	chr8:107108600-107110400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:107108800-107109200	Enhancers	Brain Angular Gyrus	brain
8	chr8:107108800-107109200	Enhancers	Brain Hippocampus Middle	brain
9	chr8:107108800-107109800	Weak transcription	Brain Substantia Nigra	brain
10	chr8:107108800-107110200	Weak transcription	Right Atrium	heart
11	chr8:107108800-107115200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:107109000-107109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:107109000-107109800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:107109000-107109800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:107109000-107116400	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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