Variant report

Variant	rs73299543
Chromosome Location	chr8:107174379-107174380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107173001..107175582-chr8:107177490..107179938,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10107881	1.00[EUR][1000 genomes]
rs10283310	1.00[EUR][1000 genomes]
rs11993757	1.00[EUR][1000 genomes]
rs11994723	1.00[EUR][1000 genomes]
rs11996800	1.00[EUR][1000 genomes]
rs16874222	0.83[AMR][1000 genomes]
rs16874224	0.83[AMR][1000 genomes]
rs16874234	1.00[AMR][1000 genomes]
rs2345576	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28699587	1.00[EUR][1000 genomes]
rs28765202	1.00[EUR][1000 genomes]
rs35718371	1.00[EUR][1000 genomes]
rs55946450	1.00[EUR][1000 genomes]
rs56191845	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58312910	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59229125	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59558140	1.00[AMR][1000 genomes]
rs59854028	1.00[EUR][1000 genomes]
rs59937524	1.00[AMR][1000 genomes]
rs6986205	1.00[EUR][1000 genomes]
rs6992182	1.00[AMR][1000 genomes]
rs7016515	0.83[AMR][1000 genomes]
rs73299560	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73299569	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299593	1.00[AMR][1000 genomes]
rs73299602	0.83[AMR][1000 genomes]
rs73301406	1.00[EUR][1000 genomes]
rs73301421	0.83[AMR][1000 genomes]
rs73301428	1.00[AMR][1000 genomes]
rs73301431	1.00[AMR][1000 genomes]
rs73301433	1.00[AMR][1000 genomes]
rs73301439	1.00[AMR][1000 genomes]
rs73301442	1.00[AMR][1000 genomes]
rs73301445	1.00[AMR][1000 genomes]
rs73301447	1.00[AMR][1000 genomes]
rs73301448	1.00[AMR][1000 genomes]
rs73301459	1.00[AMR][1000 genomes]
rs73301484	0.83[AMR][1000 genomes]
rs73301499	0.83[AMR][1000 genomes]
rs73303103	0.83[AMR][1000 genomes]
rs73698639	1.00[EUR][1000 genomes]
rs73698689	1.00[EUR][1000 genomes]
rs73698690	1.00[EUR][1000 genomes]
rs7824769	1.00[EUR][1000 genomes]
rs7827776	1.00[EUR][1000 genomes]
rs7841705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107172200-107174800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:107172600-107174400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:107174000-107175000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:107174000-107175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:107174000-107175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:107174000-107175000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:107174000-107175200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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