Variant report
| Variant | rs59937524 |
|---|---|
| Chromosome Location | chr8:107227632-107227633 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr8:107227472-107227644 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | CTCF | chr8:107227540-107227690 | MCF-7 | breast: | n/a | n/a |
| 3 | CTCF | chr8:107227500-107227650 | HBMEC | blood vessel: | n/a | n/a |
| 4 | CTCF | chr8:107227500-107227650 | MCF-7 | breast: | n/a | n/a |
| 5 | RAD21 | chr8:107227500-107227654 | SK-N-SH_RA | brain: | n/a | n/a |
| 6 | CTCF | chr8:107227500-107227650 | HCM | heart: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SLC16A14P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs16874222 | 0.83[AMR][1000 genomes] |
| rs16874224 | 0.83[AMR][1000 genomes] |
| rs16874234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2345576 | 0.83[AMR][1000 genomes] |
| rs56191845 | 1.00[AMR][1000 genomes] |
| rs58312910 | 1.00[AMR][1000 genomes] |
| rs59229125 | 0.83[AMR][1000 genomes] |
| rs59558140 | 1.00[AMR][1000 genomes] |
| rs6992182 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7016515 | 0.83[AMR][1000 genomes] |
| rs73299543 | 1.00[AMR][1000 genomes] |
| rs73299569 | 1.00[AMR][1000 genomes] |
| rs73299593 | 1.00[AMR][1000 genomes] |
| rs73299602 | 0.83[AMR][1000 genomes] |
| rs73301421 | 0.83[AMR][1000 genomes] |
| rs73301428 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301431 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301433 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301439 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301442 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301445 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301447 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301448 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301459 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301484 | 0.83[AMR][1000 genomes] |
| rs73301499 | 0.83[AMR][1000 genomes] |
| rs73303103 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv891263 | chr8:107210629-107239780 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv397163 | chr8:107221704-107230062 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107220600-107229200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr8:107225400-107231000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 3 | chr8:107227400-107230400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
