Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16874234	0.83[AMR][1000 genomes]
rs56191845	0.83[AMR][1000 genomes]
rs58312910	0.83[AMR][1000 genomes]
rs59558140	0.83[AMR][1000 genomes]
rs59937524	0.83[AMR][1000 genomes]
rs6992182	0.83[AMR][1000 genomes]
rs73299543	0.83[AMR][1000 genomes]
rs73299569	0.83[AMR][1000 genomes]
rs73299593	0.83[AMR][1000 genomes]
rs73301428	0.83[AMR][1000 genomes]
rs73301431	0.83[AMR][1000 genomes]
rs73301433	0.83[AMR][1000 genomes]
rs73301439	0.83[AMR][1000 genomes]
rs73301442	0.83[AMR][1000 genomes]
rs73301445	0.83[AMR][1000 genomes]
rs73301447	0.83[AMR][1000 genomes]
rs73301448	0.83[AMR][1000 genomes]
rs73301459	0.83[AMR][1000 genomes]
rs73301484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73301499	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305190	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107247000-107260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: