Variant report

Variant	rs73301439
Chromosome Location	chr8:107228690-107228691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16874222	0.83[AMR][1000 genomes]
rs16874224	0.83[AMR][1000 genomes]
rs16874234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2345576	0.83[AMR][1000 genomes]
rs56191845	1.00[AMR][1000 genomes]
rs58312910	1.00[AMR][1000 genomes]
rs59229125	0.83[AMR][1000 genomes]
rs59558140	1.00[AMR][1000 genomes]
rs59937524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6992182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7016515	0.83[AMR][1000 genomes]
rs73299543	1.00[AMR][1000 genomes]
rs73299569	1.00[AMR][1000 genomes]
rs73299593	1.00[AMR][1000 genomes]
rs73299602	0.83[AMR][1000 genomes]
rs73301421	0.83[AMR][1000 genomes]
rs73301428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301448	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301484	0.83[AMR][1000 genomes]
rs73301499	0.83[AMR][1000 genomes]
rs73303103	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv397163	chr8:107221704-107230062	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107220600-107229200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107225400-107231000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:107227400-107230400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:107228000-107230800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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