Variant report

Variant	rs73299602
Chromosome Location	chr8:107212484-107212485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16874222	1.00[AMR][1000 genomes]
rs16874224	1.00[AMR][1000 genomes]
rs16874234	0.83[AMR][1000 genomes]
rs56191845	0.83[AMR][1000 genomes]
rs58312910	0.83[AMR][1000 genomes]
rs59558140	0.83[AMR][1000 genomes]
rs59937524	0.83[AMR][1000 genomes]
rs6992182	0.83[AMR][1000 genomes]
rs7016515	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299543	0.83[AMR][1000 genomes]
rs73299569	0.83[AMR][1000 genomes]
rs73299593	0.83[AMR][1000 genomes]
rs73301421	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301428	0.83[AMR][1000 genomes]
rs73301431	0.83[AMR][1000 genomes]
rs73301433	0.83[AMR][1000 genomes]
rs73301439	0.83[AMR][1000 genomes]
rs73301442	0.83[AMR][1000 genomes]
rs73301445	0.83[AMR][1000 genomes]
rs73301447	0.83[AMR][1000 genomes]
rs73301448	0.83[AMR][1000 genomes]
rs73301459	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107204200-107214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:107211400-107212600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:107211400-107212600	Enhancers	Osteobl	bone
5	chr8:107211400-107212800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107211600-107212600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:107211600-107212600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:107211600-107212800	Enhancers	NHDF-Ad	bronchial
9	chr8:107211600-107213400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:107212200-107212800	Enhancers	Fetal Heart	heart
11	chr8:107212400-107214200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links