Variant report

Variant	rs73301459
Chromosome Location	chr8:107235422-107235423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16874222	0.83[AMR][1000 genomes]
rs16874224	0.83[AMR][1000 genomes]
rs16874234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2345576	0.83[AMR][1000 genomes]
rs56191845	1.00[AMR][1000 genomes]
rs58312910	1.00[AMR][1000 genomes]
rs59229125	0.83[AMR][1000 genomes]
rs59558140	1.00[AMR][1000 genomes]
rs59937524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6992182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7016515	0.83[AMR][1000 genomes]
rs73299543	1.00[AMR][1000 genomes]
rs73299569	1.00[AMR][1000 genomes]
rs73299593	1.00[AMR][1000 genomes]
rs73299602	0.83[AMR][1000 genomes]
rs73301421	0.83[AMR][1000 genomes]
rs73301428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301439	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301448	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301484	0.83[AMR][1000 genomes]
rs73301499	0.83[AMR][1000 genomes]
rs73303103	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2533164	chr8:107233777-107236814	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1956904	chr8:107234060-107236147	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv19179	chr8:107234068-107235610	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3479750	chr8:107234098-107236084	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3479751	chr8:107234132-107236053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3479753	chr8:107234216-107235975	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv1804055	chr8:107234375-107240209	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107234200-107236600	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links