Variant report

Variant	rs73301421
Chromosome Location	chr8:107220558-107220559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16874222	1.00[AMR][1000 genomes]
rs16874224	1.00[AMR][1000 genomes]
rs16874234	0.83[AMR][1000 genomes]
rs56191845	0.83[AMR][1000 genomes]
rs58312910	0.83[AMR][1000 genomes]
rs59558140	0.83[AMR][1000 genomes]
rs59937524	0.83[AMR][1000 genomes]
rs6992182	0.83[AMR][1000 genomes]
rs7016515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299543	0.83[AMR][1000 genomes]
rs73299569	0.83[AMR][1000 genomes]
rs73299593	0.83[AMR][1000 genomes]
rs73299602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301428	0.83[AMR][1000 genomes]
rs73301431	0.83[AMR][1000 genomes]
rs73301433	0.83[AMR][1000 genomes]
rs73301439	0.83[AMR][1000 genomes]
rs73301442	0.83[AMR][1000 genomes]
rs73301445	0.83[AMR][1000 genomes]
rs73301447	0.83[AMR][1000 genomes]
rs73301448	0.83[AMR][1000 genomes]
rs73301459	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
2	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107218000-107221600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:107218000-107221600	Enhancers	Osteobl	bone
5	chr8:107218200-107221200	Enhancers	NHLF	lung
6	chr8:107218200-107221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:107218400-107221200	Enhancers	NH-A	brain
8	chr8:107218600-107221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:107218600-107222000	Enhancers	HUVEC	blood vessel
10	chr8:107218800-107220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:107218800-107221400	Enhancers	HMEC	breast
12	chr8:107219200-107220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:107219200-107221000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:107219200-107221200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:107219200-107221200	Enhancers	A549	lung
16	chr8:107219400-107220800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:107219600-107220800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:107220000-107221000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:107220000-107221000	Weak transcription	NHEK	skin
20	chr8:107220200-107220600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:107220200-107220600	Enhancers	Placenta	Placenta
22	chr8:107220200-107221600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:107220400-107220600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:107220400-107220600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:107220400-107220600	Enhancers	Aorta	Aorta
26	chr8:107220400-107221400	Enhancers	Fetal Lung	lung
27	chr8:107220400-107222200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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