Variant report

Variant	rs57058504
Chromosome Location	chr1:173278128-173278129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12080065	1.00[EUR][1000 genomes]
rs13376392	1.00[EUR][1000 genomes]
rs1590497	1.00[EUR][1000 genomes]
rs34538393	1.00[EUR][1000 genomes]
rs35133735	1.00[EUR][1000 genomes]
rs56190800	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57393336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58625783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61533092	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665165	1.00[EUR][1000 genomes]
rs6680684	1.00[EUR][1000 genomes]
rs6703355	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173264600-173298200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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