The 2.0 version of rSNPBase

Variant report

Variant rs57082519
Chromosome Location chr2:11374409-11374410
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11296200-11412600 Weak transcription Aorta Aorta
2 chr2:11296800-11379800 Weak transcription Small Intestine intestine
3 chr2:11297600-11394400 Weak transcription Right Ventricle heart
4 chr2:11310600-11433000 Weak transcription Pancreas Pancrea
5 chr2:11320800-11377000 Strong transcription HepG2 liver
6 chr2:11333400-11386200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr2:11339800-11382600 Weak transcription Esophagus oesophagus
8 chr2:11341600-11384400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr2:11352600-11411200 Weak transcription Thymus Thymus
10 chr2:11352800-11424000 Weak transcription HSMMtube muscle
11 chr2:11353200-11374800 Weak transcription Colon Smooth Muscle Colon
12 chr2:11354200-11376400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr2:11354400-11382600 Weak transcription Ovary ovary
14 chr2:11354400-11388000 Weak transcription Placenta Amnion Placenta Amnion
15 chr2:11354600-11423800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr2:11355200-11379800 Weak transcription Psoas Muscle Psoas
17 chr2:11355400-11379800 Weak transcription NHEK skin
18 chr2:11355800-11376200 Weak transcription Rectal Smooth Muscle rectum
19 chr2:11357000-11377400 Weak transcription Brain Germinal Matrix brain
20 chr2:11357800-11379800 Weak transcription HMEC breast
21 chr2:11359000-11382000 Weak transcription Primary hematopoietic stem cells blood
22 chr2:11360400-11396400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr2:11360800-11375200 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr2:11360800-11382800 Weak transcription Spleen Spleen
25 chr2:11361000-11374800 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr2:11361000-11378000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr2:11361000-11379600 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr2:11361000-11380000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr2:11361000-11380200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr2:11361000-11382000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr2:11361000-11383800 Weak transcription Fetal Kidney kidney
32 chr2:11361000-11397000 Weak transcription Fetal Muscle Trunk muscle
33 chr2:11361000-11397400 Weak transcription Left Ventricle heart
34 chr2:11361000-11399200 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr2:11361000-11400200 Weak transcription Gastric stomach
36 chr2:11361000-11410800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr2:11361000-11411200 Weak transcription Fetal Thymus thymus
38 chr2:11361000-11416600 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr2:11361200-11378200 Weak transcription NH-A brain
40 chr2:11361200-11425600 Weak transcription Stomach Smooth Muscle stomach
41 chr2:11361600-11380000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr2:11361600-11380000 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr2:11361600-11396800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr2:11364000-11387000 Weak transcription Primary T helper cells fromperipheralblood blood
45 chr2:11364400-11375200 Weak transcription Liver Liver
46 chr2:11364400-11382400 Weak transcription Adipose Nuclei Adipose
47 chr2:11364400-11387600 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr2:11364400-11423800 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr2:11364600-11375200 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr2:11364600-11381600 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015