Variant report

Variant	rs2290157
Chromosome Location	chr2:11315511-11315512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11301127..11303401-chr2:11313857..11316013,2	MCF-7	breast:
2	chr2:11295273..11297238-chr2:11313930..11315670,2	MCF-7	breast:
3	chr2:11294911..11296856-chr2:11315492..11318372,2	K562	blood:
4	chr2:11293678..11297102-chr2:11313407..11316092,5	MCF-7	breast:
5	chr2:11314637..11317626-chr2:11321207..11322858,2	K562	blood:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10169455	0.88[ASN][1000 genomes]
rs10175719	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10183296	0.88[ASN][1000 genomes]
rs10192593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10192994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10194620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10203916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10205944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10929732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11681822	0.88[ASN][1000 genomes]
rs12692435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12992581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12994807	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs13002722	0.88[ASN][1000 genomes]
rs13014721	0.88[ASN][1000 genomes]
rs13394717	1.00[CEU][hapmap]
rs1868584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2122384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2230775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3771109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4353615	0.82[ASN][1000 genomes]
rs4668720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4669706	0.88[ASN][1000 genomes]
rs55714132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57082519	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57282107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57339546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57404216	1.00[AMR][1000 genomes]
rs57861284	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58007526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58258043	1.00[AMR][1000 genomes]
rs58275781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59194382	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59211791	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59266229	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59883361	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60643530	0.94[ASN][1000 genomes]
rs61575329	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6432184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6713382	0.82[ASN][1000 genomes]
rs6720821	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6730673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6736240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6755337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6759490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs72785499	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7355446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7355489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73915106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915107	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915135	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73915140	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73915144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73915151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915152	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915155	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73915156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915158	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73915164	1.00[AMR][1000 genomes]
rs73915165	1.00[AMR][1000 genomes]
rs73915388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73915389	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73915390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73915394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915395	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73915396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73917504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73917507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73917508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73917511	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7558664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7563468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7563928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7568064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7575837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7586803	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9712182	0.85[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11329400	Weak transcription	Gastric	stomach
2	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
3	chr2:11296400-11318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:11296600-11319200	Weak transcription	Fetal Lung	lung
5	chr2:11296800-11318200	Weak transcription	A549	lung
6	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
7	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
8	chr2:11298200-11317600	Weak transcription	Fetal Brain Male	brain
9	chr2:11299200-11357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:11301400-11330400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:11301800-11324600	Weak transcription	Primary B cells from cord blood	blood
12	chr2:11302400-11321400	Weak transcription	Fetal Intestine Small	intestine
13	chr2:11302400-11326200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:11302400-11335600	Weak transcription	Lung	lung
15	chr2:11304200-11317800	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:11304400-11317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:11304400-11321400	Weak transcription	Esophagus	oesophagus
18	chr2:11304400-11321400	Weak transcription	Fetal Stomach	stomach
19	chr2:11304400-11325200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:11304400-11326400	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:11304400-11329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:11309600-11315600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:11309800-11318200	Weak transcription	Placenta	Placenta
24	chr2:11309800-11327200	Weak transcription	K562	blood
25	chr2:11309800-11335600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:11310000-11319200	Weak transcription	Adipose Nuclei	Adipose
27	chr2:11310000-11337200	Weak transcription	Ovary	ovary
28	chr2:11310600-11317800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:11310600-11433000	Weak transcription	Pancreas	Pancrea
30	chr2:11312800-11319400	Weak transcription	Fetal Intestine Large	intestine
31	chr2:11313800-11316600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr2:11313800-11319000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr2:11314000-11318000	Weak transcription	Fetal Kidney	kidney
34	chr2:11314000-11318400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr2:11314000-11318400	Weak transcription	HepG2	liver
36	chr2:11314600-11329600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:11314600-11332200	Weak transcription	Colonic Mucosa	Colon
38	chr2:11314600-11364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:11314800-11316600	Enhancers	Primary hematopoietic stem cells	blood
40	chr2:11314800-11321400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:11315000-11315800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr2:11315000-11316400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr2:11315000-11317400	Enhancers	Dnd41	blood
44	chr2:11315200-11315600	Enhancers	Duodenum Mucosa	Duodenum
45	chr2:11315200-11315600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr2:11315200-11315800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr2:11315200-11315800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:11315200-11315800	Enhancers	Brain Anterior Caudate	brain
49	chr2:11315200-11315800	Enhancers	Brain Cingulate Gyrus	brain
50	chr2:11315200-11315800	Enhancers	Brain Hippocampus Middle	brain

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