Variant report

Variant	rs57087528
Chromosome Location	chr4:173942425-173942426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6829302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73002072	1.00[EUR][1000 genomes]
rs73002075	1.00[EUR][1000 genomes]
rs73002091	1.00[AMR][1000 genomes]
rs7671054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173936400-173945000	Weak transcription	HSMM	muscle
2	chr4:173937600-173944200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:173940800-173942800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:173941400-173944200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:173941400-173950000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:173942200-173942600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:173942200-173942800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:173942400-173942600	Bivalent Enhancer	Osteobl	bone
9	chr4:173942400-173942800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:173942400-173942800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:173942400-173942800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:173942400-173942800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:173942400-173943200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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