Variant report

Variant	rs7671054
Chromosome Location	chr4:173906558-173906559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57087528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73002072	1.00[EUR][1000 genomes]
rs73002075	1.00[EUR][1000 genomes]
rs73002091	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173904200-173906600	Weak transcription	Hela-S3	cervix
3	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:173904600-173906600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:173904600-173909600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:173905000-173907600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:173905000-173908000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:173905000-173908000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:173905000-173908400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:173905400-173906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:173905800-173906800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:173905800-173907000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:173906000-173907600	Enhancers	HUVEC	blood vessel
14	chr4:173906200-173907600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:173906200-173907800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:173906200-173907800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:173906200-173907800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:173906200-173907800	Enhancers	HMEC	breast
19	chr4:173906200-173908000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:173906200-173908200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:173906200-173908200	Enhancers	NHEK	skin

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