Variant report

Variant	rs570888057
Chromosome Location	chr9:100850141-100850142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100849256..100851636-chr9:100854662..100858526,4	MCF-7	breast:
2	chr9:100838071..100839825-chr9:100848704..100850871,2	K562	blood:
3	chr9:100843269..100846185-chr9:100848032..100850204,2	K562	blood:

Variant related genes	Relation type
ENSG00000106785	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	esv3341074	chr9:100848756-100851304	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3440157	chr9:100849156-100851704	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
3	chr9:100839400-100850400	Strong transcription	Dnd41	blood
4	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:100839600-100850600	Strong transcription	Thymus	Thymus
6	chr9:100842800-100850200	Weak transcription	Fetal Heart	heart
7	chr9:100845000-100850600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:100845200-100853000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr9:100845200-100856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:100845200-100856600	Weak transcription	Small Intestine	intestine
11	chr9:100845800-100853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:100846000-100850200	Weak transcription	Fetal Lung	lung
13	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr9:100846200-100862200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr9:100846400-100854200	Weak transcription	HSMMtube	muscle
16	chr9:100846400-100856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:100846400-100861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:100847400-100859400	Weak transcription	HepG2	liver
19	chr9:100847400-100869400	Weak transcription	A549	lung
20	chr9:100847600-100850200	Weak transcription	Brain Angular Gyrus	brain
21	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
22	chr9:100848600-100850400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:100848600-100850600	Enhancers	Placenta	Placenta
24	chr9:100848800-100850200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr9:100849000-100850600	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr9:100849200-100853600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:100849200-100854400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:100849200-100856400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr9:100849400-100850600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr9:100849600-100850200	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr9:100849600-100850200	Enhancers	Primary T cells from cord blood	blood
32	chr9:100849600-100850200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:100849600-100850200	Enhancers	Fetal Brain Male	brain
34	chr9:100849600-100850200	Flanking Active TSS	Psoas Muscle	Psoas
35	chr9:100849600-100850400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr9:100849600-100850400	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr9:100849600-100850400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:100849600-100850400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:100849600-100850400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:100849600-100850400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
41	chr9:100849600-100850400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr9:100849600-100850400	Flanking Active TSS	Esophagus	oesophagus
43	chr9:100849600-100850400	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr9:100849600-100850400	Flanking Active TSS	Gastric	stomach
45	chr9:100849600-100850400	ZNF genes & repeats	Pancreas	Pancrea
46	chr9:100849600-100850400	Enhancers	Stomach Mucosa	stomach
47	chr9:100849600-100850400	Genic enhancers	Spleen	Spleen
48	chr9:100849600-100850400	Enhancers	HMEC	breast
49	chr9:100849600-100850600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:100849600-100850600	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links