Variant report

Variant	rs57089954
Chromosome Location	chr1:56610007-56610008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1119073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1412222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1474439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17113456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17113474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17113557	0.83[AMR][1000 genomes]
rs2140994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58429206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
2	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
4	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56606400-56611600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:56607400-56611200	Enhancers	Fetal Intestine Large	intestine
7	chr1:56607600-56610800	Enhancers	Fetal Intestine Small	intestine
8	chr1:56608000-56611000	Weak transcription	Thymus	Thymus
9	chr1:56608800-56610400	Weak transcription	Fetal Thymus	thymus
10	chr1:56609600-56610600	Weak transcription	Primary T cells from cord blood	blood
11	chr1:56609800-56610200	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:56610000-56611400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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