Variant report

Variant	rs57092450
Chromosome Location	chr7:13193180-13193181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13187144..13190009-chr7:13193078..13195345,2	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10246813	0.88[ASN][1000 genomes]
rs10429149	0.81[ASN][1000 genomes]
rs10488246	0.81[ASN][1000 genomes]
rs10950437	0.86[ASN][1000 genomes]
rs10950438	0.86[ASN][1000 genomes]
rs10950439	0.86[ASN][1000 genomes]
rs10950440	0.85[ASN][1000 genomes]
rs11983268	0.86[ASN][1000 genomes]
rs12112570	0.86[ASN][1000 genomes]
rs12113090	0.86[ASN][1000 genomes]
rs12531362	0.86[ASN][1000 genomes]
rs12531363	0.86[ASN][1000 genomes]
rs12532331	0.85[ASN][1000 genomes]
rs12537114	0.86[ASN][1000 genomes]
rs12538973	0.83[ASN][1000 genomes]
rs12540259	0.86[ASN][1000 genomes]
rs12666139	0.88[ASN][1000 genomes]
rs12669843	0.85[ASN][1000 genomes]
rs12671645	0.85[ASN][1000 genomes]
rs12674018	0.84[ASN][1000 genomes]
rs12699454	0.88[ASN][1000 genomes]
rs13231946	0.88[ASN][1000 genomes]
rs13233335	0.88[ASN][1000 genomes]
rs16877655	0.81[ASN][1000 genomes]
rs17166712	0.81[ASN][1000 genomes]
rs17166738	0.83[ASN][1000 genomes]
rs17166756	0.85[ASN][1000 genomes]
rs1860269	0.81[ASN][1000 genomes]
rs1981639	0.85[ASN][1000 genomes]
rs2058152	0.84[ASN][1000 genomes]
rs2058153	0.84[ASN][1000 genomes]
rs2058154	0.84[ASN][1000 genomes]
rs2108928	0.90[ASN][1000 genomes]
rs2191043	0.84[ASN][1000 genomes]
rs2215221	0.81[ASN][1000 genomes]
rs2215222	0.81[ASN][1000 genomes]
rs2357197	0.86[ASN][1000 genomes]
rs2357198	0.86[ASN][1000 genomes]
rs2884118	0.86[ASN][1000 genomes]
rs2884119	0.88[ASN][1000 genomes]
rs2884120	0.88[ASN][1000 genomes]
rs4236278	0.86[ASN][1000 genomes]
rs4721187	0.85[ASN][1000 genomes]
rs55858291	0.89[ASN][1000 genomes]
rs55953034	0.89[ASN][1000 genomes]
rs56868702	0.88[ASN][1000 genomes]
rs57502698	0.86[ASN][1000 genomes]
rs57879982	0.86[ASN][1000 genomes]
rs57935827	0.80[ASN][1000 genomes]
rs59239360	0.86[ASN][1000 genomes]
rs59601961	0.86[ASN][1000 genomes]
rs60007632	0.86[ASN][1000 genomes]
rs61403192	0.86[ASN][1000 genomes]
rs61652670	0.84[ASN][1000 genomes]
rs6461000	0.81[ASN][1000 genomes]
rs6461006	0.85[ASN][1000 genomes]
rs6461007	0.86[ASN][1000 genomes]
rs6461008	0.88[ASN][1000 genomes]
rs6942805	0.81[ASN][1000 genomes]
rs6943435	0.85[ASN][1000 genomes]
rs6948241	0.84[ASN][1000 genomes]
rs6949871	0.86[ASN][1000 genomes]
rs6949879	0.86[ASN][1000 genomes]
rs6950414	0.89[ASN][1000 genomes]
rs6954638	0.85[ASN][1000 genomes]
rs6962417	0.86[ASN][1000 genomes]
rs6964875	0.86[ASN][1000 genomes]
rs6967484	0.85[ASN][1000 genomes]
rs6971600	0.85[ASN][1000 genomes]
rs6974627	0.84[ASN][1000 genomes]
rs6975432	0.83[ASN][1000 genomes]
rs718814	0.88[ASN][1000 genomes]
rs73255876	0.81[ASN][1000 genomes]
rs73257863	0.84[ASN][1000 genomes]
rs73257875	0.84[ASN][1000 genomes]
rs73257883	0.84[ASN][1000 genomes]
rs73259893	0.86[ASN][1000 genomes]
rs73259902	0.86[ASN][1000 genomes]
rs73261810	0.86[ASN][1000 genomes]
rs73261821	0.86[ASN][1000 genomes]
rs73261823	0.86[ASN][1000 genomes]
rs73261882	0.86[ASN][1000 genomes]
rs73261884	0.86[ASN][1000 genomes]
rs73261897	0.86[ASN][1000 genomes]
rs73261902	0.88[ASN][1000 genomes]
rs73263520	0.90[ASN][1000 genomes]
rs7777803	0.83[ASN][1000 genomes]
rs7777806	0.84[ASN][1000 genomes]
rs7777981	0.86[ASN][1000 genomes]
rs7777989	0.86[ASN][1000 genomes]
rs7778130	0.84[ASN][1000 genomes]
rs7778141	0.88[ASN][1000 genomes]
rs7781945	0.86[ASN][1000 genomes]
rs7782554	0.86[ASN][1000 genomes]
rs7783033	0.84[ASN][1000 genomes]
rs7783710	0.81[ASN][1000 genomes]
rs7784807	0.84[ASN][1000 genomes]
rs7784835	0.85[ASN][1000 genomes]
rs7784901	0.84[ASN][1000 genomes]
rs7785396	0.86[ASN][1000 genomes]
rs7785416	0.88[ASN][1000 genomes]
rs7787776	0.81[ASN][1000 genomes]
rs7788257	0.81[ASN][1000 genomes]
rs7788484	0.84[ASN][1000 genomes]
rs7788862	0.84[ASN][1000 genomes]
rs7789970	0.86[ASN][1000 genomes]
rs7790328	0.86[ASN][1000 genomes]
rs7790665	0.86[ASN][1000 genomes]
rs7790770	0.86[ASN][1000 genomes]
rs7790911	0.86[ASN][1000 genomes]
rs7799356	0.85[ASN][1000 genomes]
rs7799376	0.85[ASN][1000 genomes]
rs7799629	0.85[ASN][1000 genomes]
rs7799843	0.88[ASN][1000 genomes]
rs7800770	0.86[ASN][1000 genomes]
rs7803001	0.86[ASN][1000 genomes]
rs7804111	0.88[ASN][1000 genomes]
rs7804393	0.88[ASN][1000 genomes]
rs9639142	0.85[ASN][1000 genomes]
rs9639143	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv887643	chr7:13086613-13211263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1034496	chr7:13102902-13275542	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030795	chr7:13111069-13242350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1019238	chr7:13129616-13248483	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2764039	chr7:13130069-13224373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1020790	chr7:13130069-13365778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv887644	chr7:13130646-13220153	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv887645	chr7:13132400-13220153	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv887646	chr7:13137142-13237390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1015724	chr7:13143412-13242350	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv887647	chr7:13146222-13262586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1020652	chr7:13167453-13258217	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv464385	chr7:13190950-13213202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv606248	chr7:13190950-13213202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv887648	chr7:13190950-13268915	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13188800-13193600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:13191400-13193600	Enhancers	Fetal Kidney	kidney
3	chr7:13193000-13193400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:13193000-13193600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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