Variant report

Variant	rs73257883
Chromosome Location	chr7:13135176-13135177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13134342..13136300-chr7:13222418..13225299,2	MCF-7	breast:

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10429149	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10488246	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10950431	0.88[ASN][1000 genomes]
rs10950432	0.88[ASN][1000 genomes]
rs10950433	0.88[ASN][1000 genomes]
rs10950434	0.88[ASN][1000 genomes]
rs10950437	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10950438	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10950439	0.98[ASN][1000 genomes]
rs10950440	0.97[ASN][1000 genomes]
rs11983268	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11983822	0.82[ASN][1000 genomes]
rs12056050	0.88[ASN][1000 genomes]
rs12056168	0.88[ASN][1000 genomes]
rs12056220	0.85[ASN][1000 genomes]
rs12112570	0.98[ASN][1000 genomes]
rs12113090	0.98[ASN][1000 genomes]
rs12531362	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12531363	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12532331	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12533128	0.86[ASN][1000 genomes]
rs12534513	0.88[ASN][1000 genomes]
rs12534546	0.88[ASN][1000 genomes]
rs12536140	0.82[ASN][1000 genomes]
rs12536193	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12537114	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12538973	0.94[ASN][1000 genomes]
rs12539699	0.88[ASN][1000 genomes]
rs12540259	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12669843	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12671645	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12674018	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13231946	0.93[ASN][1000 genomes]
rs16877655	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17166674	0.84[ASN][1000 genomes]
rs17166683	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17166689	0.84[ASN][1000 genomes]
rs17166711	0.89[ASN][1000 genomes]
rs17166712	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17166738	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17166756	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1981639	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2005878	0.86[ASN][1000 genomes]
rs2006291	0.85[ASN][1000 genomes]
rs2058152	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2058153	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2058154	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2108928	0.94[ASN][1000 genomes]
rs2160193	0.86[ASN][1000 genomes]
rs2191043	0.96[ASN][1000 genomes]
rs2215221	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2215222	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2357197	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2357198	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28639785	0.84[ASN][1000 genomes]
rs2884118	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34404228	0.82[ASN][1000 genomes]
rs34932308	0.82[ASN][1000 genomes]
rs35023832	0.81[ASN][1000 genomes]
rs35432593	0.82[ASN][1000 genomes]
rs4236278	0.98[ASN][1000 genomes]
rs55858291	0.95[ASN][1000 genomes]
rs55953034	0.95[ASN][1000 genomes]
rs56868702	0.94[ASN][1000 genomes]
rs57092450	0.84[ASN][1000 genomes]
rs57502698	0.97[ASN][1000 genomes]
rs57879982	0.97[ASN][1000 genomes]
rs57935827	0.91[ASN][1000 genomes]
rs59239360	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59601961	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60007632	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61403192	0.98[ASN][1000 genomes]
rs61652670	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6460997	0.88[ASN][1000 genomes]
rs6460999	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6461000	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6461006	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6461007	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461008	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942805	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6943435	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6948241	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6949649	0.86[ASN][1000 genomes]
rs6949871	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949879	0.98[ASN][1000 genomes]
rs6950122	0.86[ASN][1000 genomes]
rs6950414	0.95[ASN][1000 genomes]
rs6954638	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6958548	0.81[ASN][1000 genomes]
rs6962417	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6964122	0.90[ASN][1000 genomes]
rs6964875	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6967484	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6969380	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6969769	0.86[ASN][1000 genomes]
rs6971600	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6974627	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6975432	0.94[ASN][1000 genomes]
rs73255876	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73257863	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257875	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259893	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73259902	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73261810	0.98[ASN][1000 genomes]
rs73261821	0.97[ASN][1000 genomes]
rs73261823	0.97[ASN][1000 genomes]
rs73261882	0.98[ASN][1000 genomes]
rs73261884	0.98[ASN][1000 genomes]
rs73261897	0.98[ASN][1000 genomes]
rs73261902	0.94[ASN][1000 genomes]
rs73261983	0.84[ASN][1000 genomes]
rs73263520	0.91[ASN][1000 genomes]
rs736198	0.84[ASN][1000 genomes]
rs7777803	0.94[ASN][1000 genomes]
rs7777806	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7777981	0.98[ASN][1000 genomes]
rs7777989	0.98[ASN][1000 genomes]
rs7778130	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7778887	0.86[ASN][1000 genomes]
rs7781945	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7782554	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7783033	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7783642	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7783710	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7784807	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7784901	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7786237	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7786577	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7787776	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7788257	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7788484	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7788862	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7789174	0.86[ASN][1000 genomes]
rs7789528	0.86[ASN][1000 genomes]
rs7789970	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7790328	0.97[ASN][1000 genomes]
rs7790665	0.98[ASN][1000 genomes]
rs7790770	0.98[ASN][1000 genomes]
rs7790911	0.98[ASN][1000 genomes]
rs7793289	0.88[ASN][1000 genomes]
rs7793405	0.88[ASN][1000 genomes]
rs7793573	0.88[ASN][1000 genomes]
rs7799356	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7799376	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7799629	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7802485	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7802872	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7803001	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7805331	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9639142	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9639143	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv887643	chr7:13086613-13211263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv437536	chr7:13100035-13152162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1034496	chr7:13102902-13275542	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1030795	chr7:13111069-13242350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1019238	chr7:13129616-13248483	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2764039	chr7:13130069-13224373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1020790	chr7:13130069-13365778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv887644	chr7:13130646-13220153	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv887645	chr7:13132400-13220153	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13133200-13137000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:13133200-13137400	Weak transcription	Liver	Liver
3	chr7:13134600-13143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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