Variant report

Variant	rs570933100
Chromosome Location	chr5:150951412-150951413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FAT2	TF binding region
ENSG00000086570	Chromatin interaction
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600038	chr5:150950853-150955127	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150948400-150953600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:150948400-150953600	Enhancers	Fetal Thymus	thymus
3	chr5:150948600-150952600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:150949600-150951600	Flanking Active TSS	NHEK	skin
5	chr5:150950800-150951600	Enhancers	Primary B cells from cord blood	blood
6	chr5:150950800-150951600	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:150951200-150951600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:150951200-150952000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:150951200-150952200	Enhancers	HMEC	breast
10	chr5:150951200-150953600	Weak transcription	Esophagus	oesophagus
11	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:150951400-150953400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:150951400-150959600	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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