Variant report
| Variant | rs57093591 |
|---|---|
| Chromosome Location | chr3:46350716-46350717 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:46345290..46347607-chr3:46348492..46350898,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1140865 | 0.87[EUR][1000 genomes] |
| rs11574428 | 0.87[EUR][1000 genomes] |
| rs11574429 | 0.87[EUR][1000 genomes] |
| rs11574434 | 0.87[EUR][1000 genomes] |
| rs11575821 | 0.87[EUR][1000 genomes] |
| rs2157061 | 0.87[EUR][1000 genomes] |
| rs2157062 | 0.85[EUR][1000 genomes] |
| rs2856758 | 0.90[EUR][1000 genomes] |
| rs3092960 | 1.00[EUR][1000 genomes] |
| rs3136535 | 0.94[EUR][1000 genomes] |
| rs34291293 | 0.86[EUR][1000 genomes] |
| rs34445878 | 0.87[EUR][1000 genomes] |
| rs34971514 | 0.86[EUR][1000 genomes] |
| rs35388950 | 0.86[EUR][1000 genomes] |
| rs41490645 | 0.94[EUR][1000 genomes] |
| rs58697594 | 0.81[EUR][1000 genomes] |
| rs60020651 | 0.86[EUR][1000 genomes] |
| rs6770674 | 0.87[EUR][1000 genomes] |
| rs6782522 | 0.87[EUR][1000 genomes] |
| rs6787972 | 0.89[EUR][1000 genomes] |
| rs6791789 | 0.86[EUR][1000 genomes] |
| rs6798291 | 0.87[EUR][1000 genomes] |
| rs6808835 | 0.87[EUR][1000 genomes] |
| rs73833032 | 0.83[EUR][1000 genomes] |
| rs73833033 | 0.83[EUR][1000 genomes] |
| rs762790 | 0.99[EUR][1000 genomes] |
| rs7652037 | 0.87[EUR][1000 genomes] |
| rs916094 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876734 | chr3:45725031-46468467 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:46345400-46350800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 2 | chr3:46350600-46352400 | Enhancers | Monocytes-CD14+_RO01746 | blood |
