Variant report

Variant	rs58697594
Chromosome Location	chr3:46275570-46275571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3092960	0.81[EUR][1000 genomes]
rs57093591	0.81[EUR][1000 genomes]
rs60020651	0.92[EUR][1000 genomes]
rs73833032	0.96[EUR][1000 genomes]
rs73833033	0.96[EUR][1000 genomes]
rs762790	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46264400-46276400	Weak transcription	Fetal Thymus	thymus
2	chr3:46265600-46276400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46271200-46277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:46273800-46278600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:46274000-46275600	Enhancers	Spleen	Spleen
6	chr3:46274200-46277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:46274600-46275600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:46274800-46277000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:46275000-46275600	Enhancers	Lung	lung
10	chr3:46275000-46276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:46275400-46277600	Weak transcription	Placenta	Placenta
12	chr3:46275400-46277600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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