Variant report

Variant	rs571047770
Chromosome Location	chr6:167427598-167427599
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167426218..167428514-chr6:167429903..167432841,2	K562	blood:
2	chr6:167423442..167425516-chr6:167426454..167430057,4	K562	blood:
3	chr6:167420630..167423584-chr6:167426285..167427998,2	MCF-7	breast:
4	chr6:167422410..167425516-chr6:167426454..167429181,4	K562	blood:
5	chr6:167368878..167371714-chr6:167425484..167428266,2	K562	blood:

Variant related genes	Relation type
ENSG00000026297	Chromatin interaction
ENSG00000249141	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv464140	chr6:167426681-167492552	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167413600-167428600	Weak transcription	Aorta	Aorta
2	chr6:167413600-167428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:167413600-167428800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:167413600-167438800	Weak transcription	Right Ventricle	heart
5	chr6:167413600-167449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:167413600-167452400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:167413800-167436800	Weak transcription	HSMMtube	muscle
8	chr6:167414600-167428600	Weak transcription	Fetal Brain Male	brain
9	chr6:167414600-167429200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:167414600-167429200	Strong transcription	Primary B cells from cord blood	blood
11	chr6:167414600-167430400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:167414600-167433200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:167414600-167440800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:167414600-167441000	Weak transcription	Psoas Muscle	Psoas
15	chr6:167414600-167448000	Weak transcription	Small Intestine	intestine
16	chr6:167414600-167450200	Weak transcription	Stomach Mucosa	stomach
17	chr6:167415200-167440800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:167415400-167454000	Strong transcription	Fetal Thymus	thymus
19	chr6:167415400-167456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:167416000-167444600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:167416200-167431800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:167416200-167437400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:167417200-167455400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:167417600-167443000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:167417600-167446000	Strong transcription	Dnd41	blood
26	chr6:167417600-167454800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:167417800-167429200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:167417800-167455200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:167418800-167429200	Strong transcription	Osteobl	bone
30	chr6:167419200-167432800	Strong transcription	Fetal Muscle Leg	muscle
31	chr6:167419600-167431200	Weak transcription	Right Atrium	heart
32	chr6:167419600-167439000	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:167419600-167440000	Weak transcription	Fetal Heart	heart
34	chr6:167420000-167436400	Weak transcription	Colonic Mucosa	Colon
35	chr6:167420200-167428800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:167420800-167428600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:167420800-167428600	Weak transcription	NHEK	skin
38	chr6:167420800-167447600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:167421000-167432400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:167422400-167433200	Strong transcription	Fetal Intestine Large	intestine
41	chr6:167422600-167428600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:167423000-167446400	Strong transcription	HepG2	liver
43	chr6:167423000-167457600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:167423400-167429200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:167423400-167430200	Strong transcription	GM12878-XiMat	blood
46	chr6:167423400-167446400	Strong transcription	Liver	Liver
47	chr6:167423400-167452200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:167423600-167430400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:167423600-167434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:167424000-167430200	Strong transcription	H1 Cell Line	embryonic stem cell

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