Variant report

Variant	rs57108291
Chromosome Location	chr11:9916197-9916198
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11042504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042508	1.00[EUR][1000 genomes]
rs11042513	1.00[EUR][1000 genomes]
rs11042520	1.00[EUR][1000 genomes]
rs11042522	1.00[EUR][1000 genomes]
rs11042537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042544	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042551	1.00[AMR][1000 genomes]
rs12270313	1.00[EUR][1000 genomes]
rs12270444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270596	1.00[AMR][1000 genomes]
rs12285985	1.00[EUR][1000 genomes]
rs12290340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377319	1.00[AMR][1000 genomes]
rs13377352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs360121	1.00[EUR][1000 genomes]
rs57125659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57460369	1.00[EUR][1000 genomes]
rs57669768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60528623	1.00[EUR][1000 genomes]
rs7116821	1.00[EUR][1000 genomes]
rs7358421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9630162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9971601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
3	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9891400-9916800	Weak transcription	Primary B cells from cord blood	blood
5	chr11:9891800-9916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:9894400-9916600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
9	chr11:9898200-9917000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:9901200-9916600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:9902200-9917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:9903600-9916600	Weak transcription	Fetal Lung	lung
13	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:9906800-9920400	Weak transcription	HUVEC	blood vessel
15	chr11:9909400-9916800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:9909800-9916600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
18	chr11:9910200-9921000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:9911600-9919200	Weak transcription	Fetal Brain Female	brain
20	chr11:9911800-9921200	Weak transcription	HMEC	breast
21	chr11:9913200-9916400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:9913400-9916400	Weak transcription	Lung	lung
23	chr11:9913400-9916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:9913400-9916800	Weak transcription	HepG2	liver
25	chr11:9913400-9919800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:9913400-9921000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:9913600-9921200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
29	chr11:9913800-9916400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:9913800-9927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:9914200-9926800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:9914400-9916600	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:9914400-9916600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:9914400-9917400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:9914400-9917800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:9914400-9927600	Weak transcription	Brain Anterior Caudate	brain
37	chr11:9914600-9916800	Weak transcription	Fetal Heart	heart
38	chr11:9914600-9917400	Weak transcription	Dnd41	blood
39	chr11:9914600-9917600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:9914800-9916200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:9914800-9916600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:9914800-9917000	Strong transcription	A549	lung
43	chr11:9914800-9917400	Strong transcription	Placenta	Placenta
44	chr11:9914800-9917600	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:9915000-9916200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:9915000-9916400	Strong transcription	Fetal Intestine Large	intestine
47	chr11:9915000-9917600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:9915000-9917600	Strong transcription	Liver	Liver
49	chr11:9915000-9918600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:9915000-9921000	Weak transcription	Hela-S3	cervix

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