Variant report

Variant	rs57121932
Chromosome Location	chr2:173396476-173396477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16860456	0.85[AMR][1000 genomes]
rs16860457	0.85[AMR][1000 genomes]
rs16860527	0.85[AMR][1000 genomes]
rs16860571	1.00[AMR][1000 genomes]
rs16860583	1.00[AMR][1000 genomes]
rs16860592	1.00[AMR][1000 genomes]
rs16860625	1.00[AMR][1000 genomes]
rs16860635	1.00[AMR][1000 genomes]
rs2737085	0.85[AMR][1000 genomes]
rs57528312	1.00[AMR][1000 genomes]
rs60715604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61403555	1.00[AMR][1000 genomes]
rs6709576	0.95[AFR][1000 genomes]
rs6715727	1.00[AMR][1000 genomes]
rs6741374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6754798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7588603	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173392000-173398200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:173392000-173400000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:173392600-173419600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:173393600-173398600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:173395000-173396600	Enhancers	Fetal Intestine Small	intestine
7	chr2:173395200-173396600	Enhancers	Fetal Intestine Large	intestine
8	chr2:173395200-173396800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr2:173395400-173396600	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:173395600-173396800	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr2:173395600-173397200	Enhancers	Stomach Mucosa	stomach
12	chr2:173395600-173397600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr2:173395600-173398200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:173395600-173398400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr2:173395800-173398800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:173396000-173397600	Weak transcription	Primary T cells from cord blood	blood
17	chr2:173396000-173398600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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