Variant report

Variant	rs61403555
Chromosome Location	chr2:173385391-173385392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16860456	0.85[AMR][1000 genomes]
rs16860457	0.85[AMR][1000 genomes]
rs16860527	0.85[AMR][1000 genomes]
rs16860571	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860583	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860592	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860625	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860635	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2737085	0.85[AMR][1000 genomes]
rs57121932	1.00[AMR][1000 genomes]
rs57528312	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60715604	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6709576	0.85[AFR][1000 genomes]
rs6715727	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741374	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6754798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557427	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7588603	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173377200-173386000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173383400-173386800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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