Variant report

Variant	rs57123834
Chromosome Location	chr6:119480978-119480979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57878280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58455165	1.00[EUR][1000 genomes]
rs59653792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59885310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60186711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934023	0.82[AFR][1000 genomes]
rs6936120	1.00[EUR][1000 genomes]
rs7741206	0.98[AFR][1000 genomes]
rs7771134	1.00[AMR][1000 genomes]
rs7775658	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119470200-119482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119477800-119482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:119478200-119482800	Enhancers	Adipose Nuclei	Adipose
4	chr6:119479400-119481200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:119479400-119481200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:119479400-119492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:119479600-119482600	Weak transcription	Fetal Stomach	stomach
8	chr6:119480000-119482000	Weak transcription	Fetal Lung	lung
9	chr6:119480400-119481000	Enhancers	Colon Smooth Muscle	Colon
10	chr6:119480400-119481000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr6:119480400-119481200	Enhancers	Stomach Smooth Muscle	stomach
12	chr6:119480400-119481800	Weak transcription	NHDF-Ad	bronchial
13	chr6:119480400-119482600	Weak transcription	Placenta	Placenta
14	chr6:119480600-119481800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:119480600-119483400	Weak transcription	HepG2	liver
16	chr6:119480800-119481000	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr6:119480800-119481400	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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