Variant report

Variant	rs6934023
Chromosome Location	chr6:119478546-119478547
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119471765..119474178-chr6:119478318..119480105,2	K562	blood:
2	chr6:119470751..119473289-chr6:119476279..119478742,2	MCF-7	breast:
3	chr6:119478156..119480069-chr6:119745368..119747370,2	K562	blood:
4	chr6:119473678..119475392-chr6:119476697..119479561,2	K562	blood:
5	chr6:119468731..119471643-chr6:119476917..119479241,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17441889	0.89[EUR][1000 genomes]
rs17441910	0.98[EUR][1000 genomes]
rs17513632	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs57123834	0.82[AFR][1000 genomes]
rs58455165	0.82[AFR][1000 genomes]
rs6936120	0.88[AFR][1000 genomes]
rs7741205	1.00[CEU][hapmap]
rs7741206	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7774417	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs808031	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119470200-119482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119474800-119479800	Weak transcription	HepG2	liver
3	chr6:119477000-119480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:119477000-119480800	Weak transcription	Lung	lung
5	chr6:119477600-119478800	Enhancers	Colon Smooth Muscle	Colon
6	chr6:119477600-119479600	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:119477800-119480000	Enhancers	Fetal Lung	lung
8	chr6:119477800-119482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:119478200-119478800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:119478200-119478800	Enhancers	Placenta	Placenta
11	chr6:119478200-119479400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:119478200-119479400	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:119478200-119479600	Enhancers	Fetal Stomach	stomach
14	chr6:119478200-119480200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:119478200-119480400	Enhancers	NHDF-Ad	bronchial
16	chr6:119478200-119480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:119478200-119482800	Enhancers	Adipose Nuclei	Adipose
18	chr6:119478400-119478600	Enhancers	Spleen	Spleen
19	chr6:119478400-119478800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
20	chr6:119478400-119479000	Active TSS	Fetal Brain Male	brain
21	chr6:119478400-119479000	Enhancers	Fetal Heart	heart
22	chr6:119478400-119479000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr6:119478400-119479400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:119478400-119479600	Enhancers	Ovary	ovary

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