Variant report

Variant	rs7741205
Chromosome Location	chr6:119480219-119480220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17441889	0.83[EUR][1000 genomes]
rs17441910	0.91[EUR][1000 genomes]
rs17513632	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs57123834	0.98[AFR][1000 genomes]
rs6934023	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7741206	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs808031	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119470200-119482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119477000-119480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119477000-119480800	Weak transcription	Lung	lung
4	chr6:119477800-119482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:119478200-119480400	Enhancers	NHDF-Ad	bronchial
6	chr6:119478200-119480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:119478200-119482800	Enhancers	Adipose Nuclei	Adipose
8	chr6:119478800-119480400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:119479400-119480400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:119479400-119480600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:119479400-119481200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:119479400-119481200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:119479400-119492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:119479600-119480400	Enhancers	Placenta	Placenta
15	chr6:119479600-119482600	Weak transcription	Fetal Stomach	stomach
16	chr6:119479800-119480600	Enhancers	HepG2	liver
17	chr6:119480000-119482000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links