Variant report

Variant	rs808031
Chromosome Location	chr6:119460716-119460717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119448712..119451778-chr6:119457620..119460720,3	K562	blood:
2	chr6:119460572..119463135-chr6:119668179..119670876,2	K562	blood:
3	chr6:119215479..119217588-chr6:119458829..119460838,2	K562	blood:
4	chr6:119459184..119461563-chr6:119481214..119483358,2	K562	blood:
5	chr6:119455611..119461723-chr6:119466568..119469851,5	K562	blood:
6	chr6:119214482..119216049-chr6:119459012..119461247,2	MCF-7	breast:
7	chr6:119450079..119455479-chr6:119456627..119461758,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17513632	1.00[CEU][hapmap]
rs6569052	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6934023	1.00[CEU][hapmap]
rs718534	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73767260	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741205	1.00[CEU][hapmap]
rs7741206	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:119457000-119474800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:119457800-119461200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:119457800-119462200	Enhancers	Fetal Muscle Leg	muscle
6	chr6:119458000-119460800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:119458000-119461800	Enhancers	Fetal Lung	lung
8	chr6:119458200-119461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:119458200-119461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:119458200-119461400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:119458200-119461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:119458800-119461800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:119458800-119462000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:119459000-119469000	Weak transcription	Lung	lung
15	chr6:119459200-119461000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:119459200-119468000	Weak transcription	Placenta	Placenta
17	chr6:119459400-119461400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:119459400-119462600	Enhancers	Fetal Heart	heart
19	chr6:119459400-119467800	Weak transcription	NHLF	lung
20	chr6:119459600-119461200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:119459600-119461600	Enhancers	Dnd41	blood
22	chr6:119460000-119460800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:119460000-119461000	Flanking Active TSS	K562	blood
24	chr6:119460000-119461400	Enhancers	GM12878-XiMat	blood
25	chr6:119460000-119462800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:119460200-119460800	Enhancers	NHDF-Ad	bronchial
27	chr6:119460200-119461000	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:119460200-119461200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:119460200-119461200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:119460200-119461600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:119460200-119461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:119460200-119462000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:119460200-119462400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:119460200-119462600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:119460400-119461200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:119460400-119461600	Weak transcription	Fetal Stomach	stomach
37	chr6:119460400-119461800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:119460400-119462800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:119460400-119466200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:119460600-119466000	Weak transcription	Primary hematopoietic stem cells	blood

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