Variant report

Variant	rs6569052
Chromosome Location	chr6:119458571-119458572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119448712..119451778-chr6:119457620..119460720,3	K562	blood:
2	chr6:119457082..119458872-chr6:119461721..119463270,2	K562	blood:
3	chr6:119457764..119460226-chr6:119669277..119671807,2	MCF-7	breast:
4	chr6:119455611..119461723-chr6:119466568..119469851,5	K562	blood:
5	chr6:119456618..119458872-chr6:119461770..119464134,2	K562	blood:
6	chr6:119457970..119460444-chr6:119612331..119614673,2	K562	blood:
7	chr6:119455611..119458749-chr6:119466100..119469942,4	K562	blood:
8	chr6:119450079..119455479-chr6:119456627..119461758,6	K562	blood:
9	chr6:119254124..119256815-chr6:119457284..119459467,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253194	Chromatin interaction
ENSG00000111885	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10484999	1.00[AFR][1000 genomes]
rs10485000	1.00[AFR][1000 genomes]
rs10485002	1.00[AFR][1000 genomes]
rs17052761	1.00[AFR][1000 genomes]
rs17080956	1.00[AFR][1000 genomes]
rs17080961	1.00[AFR][1000 genomes]
rs17080974	1.00[AFR][1000 genomes]
rs17080980	1.00[AFR][1000 genomes]
rs17080995	1.00[AFR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes]
rs17441889	1.00[AFR][1000 genomes]
rs17442182	1.00[AFR][1000 genomes]
rs17513883	1.00[AFR][1000 genomes]
rs17513904	1.00[AFR][1000 genomes]
rs2299885	1.00[AFR][1000 genomes]
rs3756942	1.00[AFR][1000 genomes]
rs3778105	1.00[AFR][1000 genomes]
rs3778106	1.00[AFR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes]
rs3778109	1.00[AFR][1000 genomes]
rs3798604	1.00[AFR][1000 genomes]
rs3798606	1.00[AFR][1000 genomes]
rs3798607	1.00[AFR][1000 genomes]
rs3798611	1.00[AFR][1000 genomes]
rs3798615	1.00[AFR][1000 genomes]
rs3798617	1.00[AFR][1000 genomes]
rs3798625	1.00[AFR][1000 genomes]
rs3798626	1.00[AFR][1000 genomes]
rs3798627	1.00[AFR][1000 genomes]
rs3798628	1.00[AFR][1000 genomes]
rs3798629	1.00[AFR][1000 genomes]
rs3798630	1.00[AFR][1000 genomes]
rs3798633	1.00[AFR][1000 genomes]
rs3798634	1.00[AFR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes]
rs57606082	1.00[AFR][1000 genomes]
rs57980534	1.00[AFR][1000 genomes]
rs58263645	1.00[AFR][1000 genomes]
rs58928989	1.00[AFR][1000 genomes]
rs59771009	1.00[AFR][1000 genomes]
rs60924800	1.00[AFR][1000 genomes]
rs60944461	1.00[AFR][1000 genomes]
rs61362597	1.00[AFR][1000 genomes]
rs61399235	1.00[AFR][1000 genomes]
rs61534068	1.00[AFR][1000 genomes]
rs6900434	1.00[AFR][1000 genomes]
rs6901117	1.00[AFR][1000 genomes]
rs6923550	1.00[AFR][1000 genomes]
rs6929286	1.00[AFR][1000 genomes]
rs6940750	1.00[AFR][1000 genomes]
rs718534	1.00[ASN][1000 genomes]
rs73767260	1.00[ASN][1000 genomes]
rs808031	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs947589	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119450600-119458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:119451800-119460400	Weak transcription	HSMMtube	muscle
5	chr6:119452200-119458800	Weak transcription	HepG2	liver
6	chr6:119452800-119460200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:119454000-119458600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:119454200-119458600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:119454800-119458600	Weak transcription	Pancreas	Pancrea
10	chr6:119457000-119474800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:119457800-119458600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:119457800-119460400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:119457800-119461200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:119457800-119462200	Enhancers	Fetal Muscle Leg	muscle
15	chr6:119458000-119459600	Flanking Active TSS	K562	blood
16	chr6:119458000-119459800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:119458000-119460800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:119458000-119461800	Enhancers	Fetal Lung	lung
19	chr6:119458200-119458600	Enhancers	Fetal Heart	heart
20	chr6:119458200-119459200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:119458200-119459400	Enhancers	Osteobl	bone
22	chr6:119458200-119459600	Enhancers	NHDF-Ad	bronchial
23	chr6:119458200-119460400	Enhancers	Fetal Stomach	stomach
24	chr6:119458200-119461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:119458200-119461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:119458200-119461400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:119458200-119461600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:119458400-119458800	Enhancers	HMEC	breast
29	chr6:119458400-119459200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:119458400-119459400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:119458400-119459400	Enhancers	NHEK	skin

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