Variant report

Variant	rs61399235
Chromosome Location	chr6:119491183-119491184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119487414..119489316-chr6:119489672..119491313,2	K562	blood:
2	chr6:119484833..119487194-chr6:119490008..119492668,3	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10484999	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10485000	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10485002	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17052761	1.00[AFR][1000 genomes]
rs17080956	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17080961	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17080974	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17080980	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17080995	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081019	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081026	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081029	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081031	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17081044	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17441889	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17442182	1.00[AFR][1000 genomes]
rs17513883	1.00[AFR][1000 genomes]
rs17513904	1.00[AFR][1000 genomes]
rs2299885	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28364695	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3756942	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778105	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3778106	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3778109	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798604	1.00[AFR][1000 genomes]
rs3798606	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798611	1.00[AFR][1000 genomes]
rs3798613	1.00[EUR][1000 genomes]
rs3798615	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798617	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798619	1.00[EUR][1000 genomes]
rs3798625	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798626	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798627	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798628	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798629	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798632	1.00[EUR][1000 genomes]
rs3798633	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798645	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798646	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798647	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3798656	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3823004	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3823005	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57114522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57606082	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57760251	1.00[EUR][1000 genomes]
rs57900721	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57980534	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58157033	1.00[EUR][1000 genomes]
rs58263645	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58928989	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59771009	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60924800	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60944461	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61362597	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61534068	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6569052	1.00[AFR][1000 genomes]
rs6900434	1.00[AFR][1000 genomes]
rs6901117	1.00[AFR][1000 genomes]
rs6915998	1.00[EUR][1000 genomes]
rs6918093	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922532	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922683	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922722	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922867	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6923320	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6923365	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6923550	1.00[AFR][1000 genomes]
rs6923755	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929286	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6940750	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7743195	1.00[EUR][1000 genomes]
rs7745631	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7761480	1.00[EUR][1000 genomes]
rs947589	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119479400-119492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:119484800-119499400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:119488200-119491200	Weak transcription	K562	blood
4	chr6:119490200-119492000	Enhancers	HepG2	liver
5	chr6:119490800-119491800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:119490800-119492200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:119491000-119492800	Enhancers	Fetal Heart	heart

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