The 2.0 version of rSNPBase

Variant report

Variant rs3798656
Chromosome Location chr6:119666003-119666004
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:119625200-119668600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:119627800-119667000 Weak transcription Gastric stomach
3 chr6:119636200-119667400 Weak transcription Right Ventricle heart
4 chr6:119636200-119667800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr6:119641400-119668200 Weak transcription Fetal Muscle Trunk muscle
6 chr6:119644200-119667000 Weak transcription Primary T cells fromperipheralblood blood
7 chr6:119645000-119668200 Weak transcription Aorta Aorta
8 chr6:119648200-119668000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr6:119648200-119668000 Weak transcription Esophagus oesophagus
10 chr6:119651000-119667400 Weak transcription Fetal Stomach stomach
11 chr6:119652200-119667600 Weak transcription Thymus Thymus
12 chr6:119652200-119667600 Weak transcription NHLF lung
13 chr6:119653200-119667600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr6:119653200-119667800 Weak transcription Placenta Amnion Placenta Amnion
15 chr6:119657800-119667600 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr6:119658000-119667400 Weak transcription NHEK skin
17 chr6:119658800-119667200 Weak transcription Psoas Muscle Psoas
18 chr6:119658800-119667800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr6:119660800-119667600 Weak transcription Fetal Brain Male brain
20 chr6:119661200-119668000 Weak transcription Fetal Muscle Leg muscle
21 chr6:119661400-119668000 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr6:119661600-119667800 Weak transcription Primary T cells from cord blood blood
23 chr6:119661600-119667800 Transcr. at gene 5' and 3' HepG2 liver
24 chr6:119662200-119669200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr6:119662400-119667400 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr6:119662600-119666200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr6:119662600-119666200 Weak transcription NHDF-Ad bronchial
28 chr6:119662600-119666800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr6:119662600-119666800 Weak transcription Fetal Kidney kidney
30 chr6:119662600-119667000 Weak transcription Primary neutrophils fromperipheralblood blood
31 chr6:119662600-119667000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr6:119662600-119667200 Weak transcription Right Atrium heart
33 chr6:119662600-119667400 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr6:119662600-119667400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr6:119662600-119667600 Weak transcription Primary B cells from peripheral blood blood
36 chr6:119662600-119667600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr6:119662600-119667600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr6:119662600-119667600 Weak transcription Left Ventricle heart
39 chr6:119662600-119668600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr6:119662800-119667600 Weak transcription H9 Cell Line embryonic stem cell
41 chr6:119662800-119667600 Weak transcription HUES6 Cell Line embryonic stem cell
42 chr6:119662800-119667600 Weak transcription Brain Angular Gyrus brain
43 chr6:119662800-119667800 Weak transcription Fetal Thymus thymus
44 chr6:119663600-119667600 Weak transcription Stomach Mucosa stomach
45 chr6:119664000-119667400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr6:119664000-119667600 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr6:119664000-119667600 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr6:119664000-119668200 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr6:119664200-119667200 Weak transcription Primary monocytes fromperipheralblood blood
50 chr6:119664400-119666200 Flanking Active TSS Adipose Nuclei Adipose

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Last update: Aug 31, 2015