Variant report

Variant	rs7746844
Chromosome Location	chr6:119839902-119839903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10485002	1.00[AFR][1000 genomes]
rs1342312	1.00[AFR][1000 genomes]
rs17080995	1.00[AFR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes]
rs17081019	1.00[AFR][1000 genomes]
rs17081022	1.00[AFR][1000 genomes]
rs17081026	1.00[AFR][1000 genomes]
rs17081029	1.00[AFR][1000 genomes]
rs17081031	1.00[AFR][1000 genomes]
rs17081044	1.00[AFR][1000 genomes]
rs17081345	1.00[ASN][1000 genomes]
rs17081365	1.00[ASN][1000 genomes]
rs17081380	1.00[ASN][1000 genomes]
rs17081384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17081421	1.00[ASN][1000 genomes]
rs28364695	1.00[AFR][1000 genomes]
rs3778105	1.00[AFR][1000 genomes]
rs3778106	1.00[AFR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes]
rs3778109	1.00[AFR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes]
rs3798645	1.00[AFR][1000 genomes]
rs3798646	1.00[AFR][1000 genomes]
rs3798647	1.00[AFR][1000 genomes]
rs3798656	1.00[AFR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes]
rs3823004	1.00[AFR][1000 genomes]
rs3823005	1.00[AFR][1000 genomes]
rs57114522	1.00[AFR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes]
rs57900721	1.00[AFR][1000 genomes]
rs6904042	1.00[ASN][1000 genomes]
rs6907024	1.00[AFR][1000 genomes]
rs6918093	1.00[AFR][1000 genomes]
rs6922532	1.00[AFR][1000 genomes]
rs6922683	1.00[AFR][1000 genomes]
rs6922722	1.00[AFR][1000 genomes]
rs6922867	1.00[AFR][1000 genomes]
rs6923320	1.00[AFR][1000 genomes]
rs6923365	1.00[AFR][1000 genomes]
rs6923755	1.00[AFR][1000 genomes]
rs6933644	1.00[ASN][1000 genomes]
rs6934336	1.00[ASN][1000 genomes]
rs6935561	1.00[AFR][1000 genomes]
rs73517220	1.00[ASN][1000 genomes]
rs73517239	1.00[ASN][1000 genomes]
rs73533147	1.00[ASN][1000 genomes]
rs73533157	0.94[ASN][1000 genomes]
rs73533179	1.00[ASN][1000 genomes]
rs73533181	1.00[ASN][1000 genomes]
rs73533182	1.00[ASN][1000 genomes]
rs73533201	1.00[ASN][1000 genomes]
rs73535213	1.00[ASN][1000 genomes]
rs73535242	1.00[ASN][1000 genomes]
rs7745631	1.00[AFR][1000 genomes]
rs7747065	1.00[ASN][1000 genomes]
rs7763850	1.00[ASN][1000 genomes]
rs7764304	1.00[ASN][1000 genomes]
rs947589	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018182	chr6:119833609-119866803	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119825800-119850200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:119834200-119842400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:119839200-119844600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:119839400-119848800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119839600-119844200	Weak transcription	Dnd41	blood

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