Variant report

Variant	rs6935561
Chromosome Location	chr6:119774196-119774197
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119772222..119775042-chr6:119777092..119781550,4	K562	blood:
2	chr6:119773729..119776617-chr6:119785441..119787829,2	K562	blood:
3	chr6:119772222..119774379-chr6:119780050..119782058,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAN1A1-1	chr6:119773712-119776358	ENSG00000249211
2	lnc-MAN1A1-1	chr6:119773712-119776358	NONHSAT114717

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10484999	1.00[AFR][1000 genomes]
rs10485000	1.00[AFR][1000 genomes]
rs10485002	1.00[AFR][1000 genomes]
rs1342312	1.00[AFR][1000 genomes]
rs17052761	1.00[AFR][1000 genomes]
rs17080956	1.00[AFR][1000 genomes]
rs17080961	1.00[AFR][1000 genomes]
rs17080974	1.00[AFR][1000 genomes]
rs17080980	1.00[AFR][1000 genomes]
rs17080995	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes]
rs17081019	1.00[AFR][1000 genomes]
rs17081022	1.00[AFR][1000 genomes]
rs17081026	1.00[AFR][1000 genomes]
rs17081029	1.00[AFR][1000 genomes]
rs17081031	1.00[AFR][1000 genomes]
rs17081044	1.00[AFR][1000 genomes]
rs2299885	1.00[AFR][1000 genomes]
rs28364695	1.00[AFR][1000 genomes]
rs3778105	1.00[AFR][1000 genomes]
rs3778106	1.00[AFR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes]
rs3778109	1.00[AFR][1000 genomes]
rs3798625	1.00[AFR][1000 genomes]
rs3798626	1.00[AFR][1000 genomes]
rs3798627	1.00[AFR][1000 genomes]
rs3798628	1.00[AFR][1000 genomes]
rs3798629	1.00[AFR][1000 genomes]
rs3798630	1.00[AFR][1000 genomes]
rs3798633	1.00[AFR][1000 genomes]
rs3798634	1.00[AFR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes]
rs3798645	1.00[AFR][1000 genomes]
rs3798646	1.00[AFR][1000 genomes]
rs3798647	1.00[AFR][1000 genomes]
rs3798656	1.00[AFR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes]
rs3823004	1.00[AFR][1000 genomes]
rs3823005	1.00[AFR][1000 genomes]
rs57114522	1.00[AFR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes]
rs57606082	1.00[AFR][1000 genomes]
rs57900721	1.00[AFR][1000 genomes]
rs58263645	1.00[AFR][1000 genomes]
rs59771009	1.00[AFR][1000 genomes]
rs60944461	1.00[AFR][1000 genomes]
rs61534068	1.00[AFR][1000 genomes]
rs6907024	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6918093	1.00[AFR][1000 genomes]
rs6922532	1.00[AFR][1000 genomes]
rs6922683	1.00[AFR][1000 genomes]
rs6922722	1.00[AFR][1000 genomes]
rs6922867	1.00[AFR][1000 genomes]
rs6923320	1.00[AFR][1000 genomes]
rs6923365	1.00[AFR][1000 genomes]
rs6923755	1.00[AFR][1000 genomes]
rs6929286	1.00[AFR][1000 genomes]
rs7745631	1.00[AFR][1000 genomes]
rs7746844	1.00[AFR][1000 genomes]
rs947589	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119768200-119780400	Weak transcription	Aorta	Aorta
3	chr6:119768800-119775600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:119770400-119774600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:119770400-119774800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:119770600-119774200	Weak transcription	Spleen	Spleen
7	chr6:119770600-119774400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:119770600-119776000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:119770800-119774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119770800-119774400	Weak transcription	Dnd41	blood
11	chr6:119770800-119780000	Weak transcription	Gastric	stomach
12	chr6:119771400-119780000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:119772000-119774400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:119772200-119774400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:119772200-119774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:119772800-119774200	Weak transcription	Fetal Brain Male	brain
17	chr6:119773200-119774200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:119774000-119774400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:119774000-119775800	Enhancers	Cortex derived primary cultured neurospheres	brain

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