Variant report

Variant	rs6940750
Chromosome Location	chr6:119507192-119507193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119506495..119510474-chr6:119512105..119518415,7	K562	blood:
2	chr6:119503709..119505981-chr6:119506117..119508787,2	MCF-7	breast:
3	chr6:119506358..119507997-chr6:119521018..119522691,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10484999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485000	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17052761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080912	1.00[JPT][hapmap]
rs17080956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080974	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080980	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080995	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081019	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081022	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081026	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081029	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081031	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081044	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17441889	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17442126	0.83[ASN][1000 genomes]
rs17442140	0.83[ASN][1000 genomes]
rs17442154	0.83[ASN][1000 genomes]
rs17442182	1.00[AFR][1000 genomes]
rs17513883	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17513904	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2299885	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756942	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3765248	0.83[ASN][1000 genomes]
rs3778105	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3778106	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3778109	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798604	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3798606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798611	1.00[AFR][1000 genomes]
rs3798613	1.00[EUR][1000 genomes]
rs3798615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798625	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798632	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798633	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798634	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798645	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798646	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798647	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823004	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823005	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57114522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57606082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57900721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57980534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58157033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58263645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58928989	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59771009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60944461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61362597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61399235	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61534068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569052	1.00[AFR][1000 genomes]
rs6900434	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6901117	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6901238	0.83[ASN][1000 genomes]
rs6915998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918093	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923550	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6923755	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745631	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886571	chr6:119494199-119517239	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:119492000-119507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:119492200-119527800	Weak transcription	NHEK	skin
4	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
5	chr6:119493600-119518000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood
7	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
8	chr6:119494800-119526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:119495200-119507200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:119495200-119507400	Weak transcription	Pancreas	Pancrea
11	chr6:119495400-119522000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:119495600-119522200	Weak transcription	Fetal Kidney	kidney
13	chr6:119496600-119507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:119497000-119512600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:119497000-119524000	Weak transcription	NHLF	lung
16	chr6:119497000-119524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:119497000-119524400	Weak transcription	Small Intestine	intestine
18	chr6:119497200-119518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:119497400-119507600	Weak transcription	Aorta	Aorta
20	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
21	chr6:119498200-119527400	Strong transcription	Liver	Liver
22	chr6:119498600-119508400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:119498600-119508600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:119498600-119517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:119498600-119531400	Strong transcription	HepG2	liver
26	chr6:119498800-119526800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:119499000-119517200	Strong transcription	Primary hematopoietic stem cells	blood
28	chr6:119499400-119516200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:119499400-119518200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:119499400-119525400	Weak transcription	NH-A	brain
31	chr6:119499600-119524000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:119499800-119524400	Weak transcription	Right Ventricle	heart
33	chr6:119500000-119509600	Weak transcription	Fetal Thymus	thymus
34	chr6:119500800-119515800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:119501200-119522200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:119501400-119507400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:119501400-119507600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:119501600-119507200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:119501600-119507200	Weak transcription	Dnd41	blood
40	chr6:119501600-119507400	Weak transcription	Left Ventricle	heart
41	chr6:119501600-119513200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:119501600-119515000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:119501600-119518000	Weak transcription	Thymus	Thymus
44	chr6:119501600-119524200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:119501800-119509600	Weak transcription	Primary T cells from cord blood	blood
46	chr6:119502000-119507200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:119502000-119509400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:119502000-119510000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:119502000-119515400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:119502000-119523800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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