Variant report

Variant	rs17441889
Chromosome Location	chr6:119494079-119494080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119484958..119487495-chr6:119493073..119495556,3	K562	blood:
2	chr6:119494035..119497097-chr6:119497840..119499702,3	K562	blood:
3	chr6:119476078..119477626-chr6:119493274..119495508,2	K562	blood:
4	chr6:119493505..119495006-chr6:119566194..119568932,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10484999	1.00[AFR][1000 genomes]
rs10485000	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10485002	1.00[AFR][1000 genomes]
rs17052761	1.00[AFR][1000 genomes]
rs17080912	1.00[JPT][hapmap]
rs17080956	1.00[AFR][1000 genomes]
rs17080961	1.00[AFR][1000 genomes]
rs17080974	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17080980	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17080995	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081016	1.00[AFR][1000 genomes]
rs17081019	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081022	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081026	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081029	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081031	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17081044	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17441910	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17441930	0.87[AMR][1000 genomes]
rs17442126	0.81[ASN][1000 genomes]
rs17442140	0.81[ASN][1000 genomes]
rs17442154	0.81[ASN][1000 genomes]
rs17442182	1.00[AFR][1000 genomes]
rs17513632	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs17513883	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17513904	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2299885	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs28364695	1.00[AFR][1000 genomes]
rs3756942	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3765248	0.81[ASN][1000 genomes]
rs3778105	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3778106	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3778108	1.00[AFR][1000 genomes]
rs3778109	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798604	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3798606	1.00[AFR][1000 genomes]
rs3798607	1.00[AFR][1000 genomes]
rs3798611	1.00[AFR][1000 genomes]
rs3798615	1.00[AFR][1000 genomes]
rs3798617	1.00[AFR][1000 genomes]
rs3798625	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798626	1.00[AFR][1000 genomes]
rs3798627	1.00[AFR][1000 genomes]
rs3798628	1.00[AFR][1000 genomes]
rs3798629	1.00[AFR][1000 genomes]
rs3798630	1.00[AFR][1000 genomes]
rs3798632	1.00[JPT][hapmap]
rs3798633	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798634	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798635	1.00[AFR][1000 genomes]
rs3798637	1.00[AFR][1000 genomes]
rs3798638	1.00[AFR][1000 genomes]
rs3798639	1.00[AFR][1000 genomes]
rs3798640	1.00[AFR][1000 genomes]
rs3798641	1.00[AFR][1000 genomes]
rs3798642	1.00[AFR][1000 genomes]
rs3798643	1.00[AFR][1000 genomes]
rs3798645	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798646	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798647	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3798656	1.00[AFR][1000 genomes]
rs3823001	1.00[AFR][1000 genomes]
rs3823004	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3823005	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs57114522	1.00[AFR][1000 genomes]
rs57560532	1.00[AFR][1000 genomes]
rs57606082	1.00[AFR][1000 genomes]
rs57900721	1.00[AFR][1000 genomes]
rs57980534	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs58263645	1.00[AFR][1000 genomes]
rs58928989	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59771009	1.00[AFR][1000 genomes]
rs60924800	1.00[AFR][1000 genomes]
rs60944461	1.00[AFR][1000 genomes]
rs61362597	1.00[AFR][1000 genomes]
rs61399235	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61534068	1.00[AFR][1000 genomes]
rs6569052	1.00[AFR][1000 genomes]
rs6900434	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6901117	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6901238	0.81[ASN][1000 genomes]
rs6918093	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs6922532	1.00[AFR][1000 genomes]
rs6922683	1.00[AFR][1000 genomes]
rs6922722	1.00[AFR][1000 genomes]
rs6922867	1.00[AFR][1000 genomes]
rs6923320	1.00[AFR][1000 genomes]
rs6923365	1.00[AFR][1000 genomes]
rs6923550	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6923755	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs6929286	1.00[AFR][1000 genomes]
rs6934023	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6940750	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7741205	1.00[CEU][hapmap]
rs7741206	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs7745631	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs808031	1.00[CEU][hapmap]
rs947589	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119484800-119499400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:119491200-119494600	Enhancers	K562	blood
3	chr6:119491200-119495400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119491200-119495600	Enhancers	Fetal Lung	lung
5	chr6:119491800-119496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:119491800-119500400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:119491800-119501000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:119492000-119494400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:119492000-119494400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:119492000-119507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:119492200-119505400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:119492200-119527800	Weak transcription	NHEK	skin
14	chr6:119492400-119494800	Weak transcription	Stomach Mucosa	stomach
15	chr6:119492400-119494800	Enhancers	NHDF-Ad	bronchial
16	chr6:119492400-119498200	Weak transcription	Liver	Liver
17	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
18	chr6:119492600-119498200	Enhancers	HepG2	liver
19	chr6:119492600-119498600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:119492600-119500400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:119492600-119505600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:119492800-119494400	Weak transcription	Fetal Heart	heart
23	chr6:119493200-119495200	Enhancers	Hela-S3	cervix
24	chr6:119493400-119494200	Enhancers	NHLF	lung
25	chr6:119493400-119496400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:119493400-119500400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:119493600-119494600	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:119493600-119518000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:119494000-119494800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:119494000-119495600	Enhancers	Fetal Kidney	kidney
31	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood

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