Variant report

Variant	rs17081084
Chromosome Location	chr6:119699151-119699152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10484999	1.00[EUR][1000 genomes]
rs10485000	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs10485002	1.00[EUR][1000 genomes]
rs1342312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080912	0.85[JPT][hapmap]
rs17080956	1.00[EUR][1000 genomes]
rs17080961	1.00[EUR][1000 genomes]
rs17080974	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17080980	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17080995	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081016	1.00[EUR][1000 genomes]
rs17081019	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081022	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081026	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081029	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081031	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17081044	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2299885	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs28364695	1.00[EUR][1000 genomes]
rs3756942	0.85[JPT][hapmap]
rs3778105	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3778106	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3778108	1.00[EUR][1000 genomes]
rs3778109	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798606	1.00[EUR][1000 genomes]
rs3798607	1.00[EUR][1000 genomes]
rs3798613	1.00[EUR][1000 genomes]
rs3798615	1.00[EUR][1000 genomes]
rs3798617	1.00[EUR][1000 genomes]
rs3798619	1.00[EUR][1000 genomes]
rs3798625	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798626	1.00[EUR][1000 genomes]
rs3798627	1.00[EUR][1000 genomes]
rs3798628	1.00[EUR][1000 genomes]
rs3798629	1.00[EUR][1000 genomes]
rs3798630	1.00[EUR][1000 genomes]
rs3798632	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798633	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798634	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798635	1.00[EUR][1000 genomes]
rs3798637	1.00[EUR][1000 genomes]
rs3798638	1.00[EUR][1000 genomes]
rs3798639	1.00[EUR][1000 genomes]
rs3798640	1.00[EUR][1000 genomes]
rs3798641	1.00[EUR][1000 genomes]
rs3798642	1.00[EUR][1000 genomes]
rs3798643	1.00[EUR][1000 genomes]
rs3798645	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798646	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798647	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3798656	1.00[EUR][1000 genomes]
rs3823001	1.00[EUR][1000 genomes]
rs3823004	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs3823005	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs57114522	1.00[EUR][1000 genomes]
rs57560532	1.00[EUR][1000 genomes]
rs57606082	1.00[EUR][1000 genomes]
rs57760251	1.00[EUR][1000 genomes]
rs57900721	1.00[EUR][1000 genomes]
rs57980534	1.00[EUR][1000 genomes]
rs58157033	1.00[EUR][1000 genomes]
rs58263645	1.00[EUR][1000 genomes]
rs59771009	1.00[EUR][1000 genomes]
rs60924800	1.00[EUR][1000 genomes]
rs60944461	1.00[EUR][1000 genomes]
rs61362597	1.00[EUR][1000 genomes]
rs61534068	1.00[EUR][1000 genomes]
rs6915998	1.00[EUR][1000 genomes]
rs6918093	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs6922532	1.00[EUR][1000 genomes]
rs6922683	1.00[EUR][1000 genomes]
rs6922722	1.00[EUR][1000 genomes]
rs6922867	1.00[EUR][1000 genomes]
rs6923320	1.00[EUR][1000 genomes]
rs6923365	1.00[EUR][1000 genomes]
rs6923755	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs6929286	1.00[EUR][1000 genomes]
rs7743195	1.00[EUR][1000 genomes]
rs7745631	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs7761480	1.00[EUR][1000 genomes]
rs947589	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119688800-119701400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:119689600-119720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119695200-119700400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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